Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1871 ATGGAGAATAATCCGAAGGAGCTTCCAGAGCAGCAAAGGGTCAATTTCAACGGAGACCCTCACATTCACGACAATGGCAACAGCTTCAACCACTTCCAACCCACACCCGCCGTCGATTCTGGTTACGCTCTTAACCATTCCATGGCTCGTTCTCTCCGCAAACGCCCTTGGCATCACTCCAACAACGGAACTTCTCCAGATCAAGTGGACGTTTCGTGTAAAGTTTATGTAGCACCTGTTCCAAGAACGGCAACGGAGGATGAGATTCGCCCTGTATTCGAAGAACATGGAACTATTGTTGAGATTGTTCTTTTAAAACATAAGAAAACTGGGACACGGCAAGGAAGTTGTTTTGTAAAATATGCAACATTTGATGAAGCTGATAGGGCTATTAAGGTTTTAAACAATAAATATACATTTGCTGGGGAATCATATCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGCCTTGGGGTTCGAGGGTTATGCCGTAACATGGAAAAGAAAGATCCTTTAGAAGAGGTGGCAGATAAAGTTTTTGTCAGTTCCATCAACAAAGAAGCTACAAACAAGGATATTGAAGAAATATTTTCCCCTTATGGGCATGTTGAAGATATCTTCTTTAAAAGCACTCATGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTGGCTGCAATCAAAGGGCTGAATAAAACCTTCACAATGCGAGGTTGTGATCATCCTTTAATTGTTCGTTTTGCGGATCCTAAGAAGCCTAAGACTGGAGAATCAAGGGGCAACTATTTATCTGTGAATGCAAATTTTGGTCCTTGTTCCCAAGAACCAGCAGTATGGCCACTGCCAAATTTTGGTGATTCCAATACTGGAGGAATTATTCTGCCTCATGCCCCGTATCATTCCACAATTGCACATCCACAAGTTACTTCTCATATGCAAAACTGGGAACCTGGCGCTACTGTGTTACAACATCCATTTCCTCCCCATCAAGTGCATCCACAGGTGGCTTCAATGTCTTTGGGGTCAATTCAAGCTCCCAAATTGTCTTCTCAGCTATTTATTACTGAGGTGCAAAGAGAATCACATCCAGCAGATTCATCGGTTCAAAATATAGAGCAGCAGCTTAGTTCACAGACCGAAAGCAACCCTAGTACAGTTACTGGCATTACCCCGCCTGATATGCCTACAAGTTCCCAAGATGAAGATTTTCCAGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTGATAAGTACTACTACAACTGTGTAACTTGTGAAAGCAGATGGGATAAGCCTGAGGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAGCAGGAGCAGGAGGATAATTCCTGTAGTCTCTCACAATTGTCATTATCTTCCTCTCAACTAGTTGGTCAAAAACAACAGGAAACAGATCATGACCACAAGCAATCAGAAACAAGTCCTGTTGTTGGATAG 1479 0.426 MENNPKELPEQQRVNFNGDPHIHDNGNSFNHFQPTPAVDSGYALNHSMARSLRKRPWHHSNNGTSPDQVDVSCKVYVAPVPRTATEDEIRPVFEEHGTIVEIVLLKHKKTGTRQGSCFVKYATFDEADRAIKVLNNKYTFAGESYPVVVKFADRELERLGVRGLCRNMEKKDPLEEVADKVFVSSINKEATNKDIEEIFSPYGHVEDIFFKSTHGYAFVKFSNREMALAAIKGLNKTFTMRGCDHPLIVRFADPKKPKTGESRGNYLSVNANFGPCSQEPAVWPLPNFGDSNTGGIILPHAPYHSTIAHPQVTSHMQNWEPGATVLQHPFPPHQVHPQVASMSLGSIQAPKLSSQLFITEVQRESHPADSSVQNIEQQLSSQTESNPSTVTGITPPDMPTSSQDEDFPECDWSEHYCPDGDKYYYNCVTCESRWDKPEEYALYEKESQKQQEQEDNSCSLSQLSLSSSQLVGQKQQETDHDHKQSETSPVVG* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1871 492 SMART ww_5 407 439 IPR001202 GO:0005515
Gso3g1871 492 Gene3D - 60 159 IPR012677 -
Gso3g1871 492 SUPERFAMILY RNA-binding domain, RBD 55 159 IPR035979 GO:0003676
Gso3g1871 492 Pfam WW domain 410 437 IPR001202 GO:0005515
Gso3g1871 492 MobiDBLite consensus disorder prediction 453 474 - -
Gso3g1871 492 PANTHER RNA BINDING PROTEIN 52 480 - -
Gso3g1871 492 ProSitePatterns WW/rsp5/WWP domain signature. 412 437 IPR001202 GO:0005515
Gso3g1871 492 MobiDBLite consensus disorder prediction 361 401 - -
Gso3g1871 492 Gene3D - 397 459 - -
Gso3g1871 492 SUPERFAMILY WW domain 411 443 IPR036020 GO:0005515
Gso3g1871 492 MobiDBLite consensus disorder prediction 444 492 - -
Gso3g1871 492 CDD WW 410 439 IPR001202 GO:0005515
Gso3g1871 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 138 IPR000504 GO:0003723
Gso3g1871 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 239 IPR000504 GO:0003723
Gso3g1871 492 SMART rrm1_1 180 250 IPR000504 GO:0003723
Gso3g1871 492 SMART rrm1_1 74 150 IPR000504 GO:0003723
Gso3g1871 492 ProSiteProfiles WW/rsp5/WWP domain profile. 412 439 IPR001202 GO:0005515
Gso3g1871 492 Gene3D - 166 262 IPR012677 -
Gso3g1871 492 MobiDBLite consensus disorder prediction 361 407 - -
Gso3g1871 492 SUPERFAMILY RNA-binding domain, RBD 175 263 IPR035979 GO:0003676
Gso3g1871 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Gso3g1871 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 154 IPR000504 GO:0003723
Gso3g1871 492 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 52 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1871 Gso-Chr3 44274971 44281722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1871 52 302 Eukaryotic Initiation Factors Gene Family AT1G71770 25.475 2.19e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1871 K13207 - gmx:100795107 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1834 19 47062490 47071171 Gso3g1871 3 44274971 44281722 GST