Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1870 ATGGAGAATACTAAGATGATGGGGGTGAAGATACAGGACTATGCTTCTAATATGGAGAGTAATAATTATCCATTCTTTGATTTCTCTGAAGATAAGGGCTCTTTAGGGTTTATGGAGCTATTGGGTGCGCAAGACTATAGTCCTCTCCTTGATTTCCCTCTATCGTCACACGTGTCAGGGCCTCAAACCTCTTCTGTTAAGGAACCACCTGAGACTAAGAAAGAGTGTTCCGAGGTAACTAATAACAACCAGCAACCTGCGACTCCGAACTCTTCATCCATTTCCTCCGCGTCCAGTGAGGTTTTCTATGATGAACAGAATAAAACTGTAGATCAAGCACCTGAACACCAAAAGACAAAGGAACAGTTGAAGGCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGATACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGCGATCTTTTAGCGACCCAAGCATTGTGGTGACAACCTACGAAGGACAACACACGCATCCAAGCCCAGTTATGGGTCGCTCCAACAACTTTGGTTCGGTAATTATGTCTGGATCTGCTGGAAACTACATGTCCCAATATTATCAGCAGCAGCATCAACAAGTCCACATCGATGCATTGTCCTCTTTGGGTTTCCTCTCTTCTTCGTCTTCAAGGAATGCCACTTTTCCTCAAGAGACTGCCTTGTTAAGTGACTATGGGCTTCTTCAAGATGTTGTTTCTTCACATATGTTGAAAGAAGATTAG 864 0.4387 MENTKMMGVKIQDYASNMESNNYPFFDFSEDKGSLGFMELLGAQDYSPLLDFPLSSHVSGPQTSSVKEPPETKKECSEVTNNNQQPATPNSSSISSASSEVFYDEQNKTVDQAPEHQKTKEQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFSDPSIVVTTYEGQHTHPSPVMGRSNNFGSVIMSGSAGNYMSQYYQQQHQQVHIDALSSLGFLSSSSSRNATFPQETALLSDYGLLQDVVSSHMLKED* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1870 287 ProSiteProfiles WRKY domain profile. 144 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1870 287 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 270 IPR044810 GO:0003700
Gso3g1870 287 SMART WRKY_cls 149 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1870 287 MobiDBLite consensus disorder prediction 109 134 - -
Gso3g1870 287 PANTHER WRKY TRANSCRIPTION FACTOR 24 270 - -
Gso3g1870 287 SUPERFAMILY WRKY DNA-binding domain 141 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g1870 287 Pfam WRKY DNA -binding domain 150 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1870 287 PIRSF WRKY_txn_fact_IIc 1 287 IPR017396 GO:0003700
Gso3g1870 287 Gene3D WRKY domain 133 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g1870 287 Coils Coil 113 133 - -
Gso3g1870 287 MobiDBLite consensus disorder prediction 76 106 - -
Gso3g1870 287 MobiDBLite consensus disorder prediction 56 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1870 Gso-Chr3 44271426 44273346 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1870 26 287 WRKY Transcription Factor Family AT2G47260 47.352 1.05e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso3g1870 WRKY 1.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1870 - - gmx:732590 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1833 19 47059017 47060822 Gso3g1870 3 44271426 44273346 GST
Gso3g1870 3 44271426 44273346 Gso2g0096 2 1022578 1024754 PCT
Gso3g1870 3 44271426 44273346 Gso10g0100 10 1078969 1081104 PCT
Gso2g0096 2 1022578 1024754 Gso3g1870 3 44271426 44273346 PCT
Gso10g0100 10 1078969 1081104 Gso3g1870 3 44271426 44273346 PCT