Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1867 ATGTCGAAGAGGAAGTTCGGATTCGAAGGTTTCGGCATAAACCGCCAATCCACCTACAGCTTCGAGCGACCCCAGGCCCCTCAGCGACTCTACATCCCTCCCTCCGCGCGTCACGGCCACGACCACTACGAAGACACCGACATCGACAACATCGACTACGACGACAACAACAGCAACAACAACAACAACAAGGACGACGACGACGATTACGGGAGCAATAATAACAACGGTGGCGGCAACGACGAAGACGAAATCGACCCCTTGGACGCCTTCATGGAGGGGATTCACGAGGAGATGCGGGCGGCCCCGCCGCCGAAGCCGAAGGAGAAGGCGGAGGACCGGTACCGCGACGACGAGGACGACGATCCCATGGAGAGCTTTCTGATGGCGAAGAAGGATTTAGGGTTAACTCTCGCGTCGGACGCGCTGCACGCTGGGTATGATTCCGATGAGGAGGTTTATGCTGCCGCGAAAGCTGTAGACGCTGGTATGATTGAGTATGATTCCGATGATAACCCTATTGTTATTGACAAGAAGAAGATTGAACCCATTCCTGCTCTTGATCACTCTTCCATTGATTACGAGCCCTTCACTAAGGATTTTTATGAGGAGACACCTTCAATATCAGGTATGAGTGAGCAGGATGTAAGTGAATACAGGAAGAGTTTGGCTATTCGTGTATCAGGTTTTGATGTTCCCAAGCCAATAAAGGCATTTGAGGACTGTGGGTTTTCTTCACAGATTATGAATGCTATTAAAAAACAAGGATATGAGAAGCCGACAACTATACAATGTCAGGCTTTGCCAGTTGTGCTTTCTGGCAGGGATATCATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTTCTTTTGTACTTCCTATGATCGTGCATATCATGGATCAGCCTGAGCTTCAGAAGGAGGAGGGGCCCATAGGGGTGATATGTGCACCTACCCGAGAATTGGCACATCAGATTTTTCTGGAGGCCAAGAAATTTGCAAAAGCGTATGGGGTACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAGCTTAAGGCGGGATGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAGATGAAGGCATTGACGATGATGAGAGCAACTTACCTGGTGCTTGATGAGGCTGATCGGATGTTTGATCTTGGGTTTGAGCCGCAAGTAAGGTCCATTGTTGGGCAGATTAGGCCGGACCGCCAAACCTTACTCTTTTCTGCAACTATGCCTTGTAAAGTTGAAAAGTTGGCCAGGGAAATCCTTTCTGATCCTATTAGAGTTACTGTTGGAGAGGTGGGGATGGCAAATGAAGATATTACTCAAGTTGTTCACGTAACTCCTTCCGATTCTGAGAAATTGCCCTGGCTTTTGGAAAAGCTGCCTGAAATGATTGATCAAGGTGATACCCTAGTTTTTGCTTCGAAAAAGGCTACTGTGGATGAAATTGAATCACAATTGGCTCAAAGAGGCTTTAAAGTTGCTGCATTGCATGGTGATAAAGATCAAGCTTCTCGTATGGATATTTTACAGAAGTTTAAATCTGGCCTCTACCATGTGCTAATTGCAACTGATGTTGCTGCCCGTGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGCCGTGCTGGTGACAAGGACGGGGTTGCATACACTCTTATAACTCTGAAAGAAGCACGATTTGCTGGTGAATTGGTCAATAGCTTAGTTGCTGCTGGTCAGAATGTGTCTGTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCAAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAAAGGTAGAGGAGGAGGTGGTGGGGGTGGCCGAGGTGTGCGAGGAGTGGATTTTGGCCTGGGCATTGGATATAATCCTGAGTCAAATAATGCACCATCTACCACAGCTCCCAGTCGATCTGCCGCTGTAAATTCTCTGCGAACAGGAATGATGTCACAATTCAAGAGTAACTTTGTTGCTGCTTCATCAAACTCTCAGAATCAAGGCTTTGGTAACAATACAAGCATGACTGCTAATAAGAGAACAGCACTCCCTGGTTTTGTATCCGGTGGATCAATTGGTGGTGACATAAATACTTATCAGAGTACTGCTTCACCCAATCCTGCTACATCAGCGGTAATTTCCACCAGTCAAGGTTATGGAGTAAATCCTGGTCAGAAGAGCACGAACAGTTCTAAACCTAAAGAAAGGCGGAGACCATCAGGTTGGGATAGATAG 2349 0.4662 MSKRKFGFEGFGINRQSTYSFERPQAPQRLYIPPSARHGHDHYEDTDIDNIDYDDNNSNNNNNKDDDDDYGSNNNNGGGNDEDEIDPLDAFMEGIHEEMRAAPPPKPKEKAEDRYRDDEDDDPMESFLMAKKDLGLTLASDALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFTKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFSSQIMNAIKKQGYEKPTTIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIFLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPCKVEKLAREILSDPIRVTVGEVGMANEDITQVVHVTPSDSEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITLKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGGGGGRGVRGVDFGLGIGYNPESNNAPSTTAPSRSAAVNSLRTGMMSQFKSNFVAASSNSQNQGFGNNTSMTANKRTALPGFVSGGSIGGDINTYQSTASPNPATSAVISTSQGYGVNPGQKSTNSSKPKERRRPSGWDR* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1867 782 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 389 397 IPR000629 -
Gso3g1867 782 SMART ultradead3 256 458 IPR014001 -
Gso3g1867 782 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 268 443 IPR014001 -
Gso3g1867 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 611 IPR027417 -
Gso3g1867 782 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 24 45 666 - -
Gso3g1867 782 Pfam Helicase conserved C-terminal domain 472 577 IPR001650 -
Gso3g1867 782 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 237 265 IPR014014 GO:0003724
Gso3g1867 782 MobiDBLite consensus disorder prediction 768 782 - -
Gso3g1867 782 Gene3D - 200 442 IPR027417 -
Gso3g1867 782 CDD DEADc_DDX42 248 444 - -
Gso3g1867 782 Gene3D - 443 621 IPR027417 -
Gso3g1867 782 MobiDBLite consensus disorder prediction 731 782 - -
Gso3g1867 782 SMART helicmild6 496 577 IPR001650 -
Gso3g1867 782 MobiDBLite consensus disorder prediction 624 649 - -
Gso3g1867 782 MobiDBLite consensus disorder prediction 731 767 - -
Gso3g1867 782 Pfam DEAD/DEAH box helicase 261 432 IPR011545 GO:0003676|GO:0005524
Gso3g1867 782 MobiDBLite consensus disorder prediction 98 117 - -
Gso3g1867 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 446 IPR027417 -
Gso3g1867 782 MobiDBLite consensus disorder prediction 1 86 - -
Gso3g1867 782 CDD SF2_C_DEAD 455 587 - -
Gso3g1867 782 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 468 617 IPR001650 -
Gso3g1867 782 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 666 - -
Gso3g1867 782 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1867 Gso-Chr3 44226595 44231461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1867 237 593 Eukaryotic Initiation Factors Gene Family AT3G13920 35.556 1.09e-61 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1867 K12835 - gmx:100805571 1383.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1829 19 47009884 47014170 Gso3g1867 3 44226595 44231461 GST