Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1866 ATGTCAATTGGTATATTGAAAAAGGTTCAAGGCTTGGTGCTGAAATGGATTCTTATATTATCTTGCCTGGTATATATGATTGAGGCTGGTGAAAATGATAAAACAATGGAGCCCCCTTCTTTATATGATTCTAGATCACCTTTGGCCTTTGTTGTTGTTCATGATCTACCTCTAACAGCAAATCACCATGTGTTGAAGCATGTGCTTTCTCATGGTGCACCAATTGCAGCACTGTCAACAGTCAATCCTCCTTTATATGGTCCTTTCACAAGCAATGGCCACTCCCCTGCAAGTTCACATTTATCCATACCGTTCAAGAAGAAGAGTGAAGTGAAACCTCCAATTTCTGTCTTTAAAAATATTGCTCCTGTGCATTCTACTGCAGCTGCAGGCCCTTCCGCTTTGGCCCAGCCACCATTGTCTCCTTATGCTTCTAATTGTTGTAAACAAGACATGGTGCTGAAAAGGGGTAGTAAGGATTGCCACTGTGCATATCCCATAAAGCTAGACCTTTTTCTTTCGAATGTCTCTCAAAATCCTAATTGGAATGATTTTCTTGAAGAATTAGCTACCCAGCTTGGGTTGCGAAATACCCAGATTGAACTGATAAACTTTTATGTACTCAGCTTATCAACATTAAATATATCAATGAATATTACTCCACATAAAGGCATCAGTTTTTCTGCCAATGAAGTTTCTAGAATAAACTCTTCGCTTTCAATGCATAAGGTTCAATTAGACCCTGGATTAGTGGGTGGATACAAACTTCTCAATTTAACGTGGTTTGAACCACCTCCGCCTTCTCAAGCTCCTACATTAGCTGCATCACCTGTGAATACACCTTTGCATCATTCACCTACTTCTACATCATCATCGAGTTCTCCGAAAAGAGGAAGGCATTCAAATTTGTTTCTTATTCTTGGAATTGCTATTGGCATAATCTTCATTGCTATCATATCTGTACTTATATTCTGTTTATGTACGTTTCTGTCAAAAGCAAAGACACCTCCGATAGAAACTGAAAAGCCAAGGACAGGGAGTGCAATTTCAACTGTGGGTTCTCTTCCCCACCCAACTAGTACACGATTTATTGCTTATGAAGAGCTTAAAGAAGCAACAAACAATTTTGAACCAGCGAGTGTTCTTGGAGAAGGAGGATTTGGTAGAGTTTTTAAAGGTGTCTTAAATGATGGTACTCATGTAGCAATTAAGAGGCTTACAAATGGAGGGCAACAGGGTGACAAAGAGTTTTTGGTTGAGGTTGAGATGCTTAGCCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTTTAGTAATCGTGACTCATCACAAAATGTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAGGCTTGGCTTCATGGTCCCTTGGGAATCAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCGCTTGATGCTGCAAGGGGACTTTCATACCTGCATGAAGACTCACAGCCCTGTGTAATACATAGAGACTTCAAGGCATCCAACATATTGCTTGAGAACAATTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGGACATTTGGGTACGTTGCTCCTGAATATGCCATGACTGGACACCTACTTGTTAAAAGTGACGTTTATAGCTATGGTGTTGTCTTGCTGGAACTGCTTACTGGCAGGAAGCCTGTGGATATGTCACAGCCAACTGGACAAGAGAATCTTGTTACTTGGGCTAGGCCAATCCTTAGAGATAAGGACCGGTTGGAAGAGATTGCTGATCCAAGACTTGGTGGAAAGTATCCAAAGGAAGATTTTGTACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCTAGAAGCAAACCAACGACCCACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAGCGCGTCACAGAATACCAAGATTCTGTGTTAGCCTCATCCAATGCACGACCCAACCTACGACAGTCCTCTAGCACTTTTGAATTTGATGGAACATCTTCAATGTTCTCTTCAGGTCCTTACTCTGGTCTAAGTGCCTTTGACAATGACAACATTTCTAGGACTGTGGTTTTCTCTGAAGATCTTTGTGAAGGACGATGA 2163 0.4142 MSIGILKKVQGLVLKWILILSCLVYMIEAGENDKTMEPPSLYDSRSPLAFVVVHDLPLTANHHVLKHVLSHGAPIAALSTVNPPLYGPFTSNGHSPASSHLSIPFKKKSEVKPPISVFKNIAPVHSTAAAGPSALAQPPLSPYASNCCKQDMVLKRGSKDCHCAYPIKLDLFLSNVSQNPNWNDFLEELATQLGLRNTQIELINFYVLSLSTLNISMNITPHKGISFSANEVSRINSSLSMHKVQLDPGLVGGYKLLNLTWFEPPPPSQAPTLAASPVNTPLHHSPTSTSSSSSPKRGRHSNLFLILGIAIGIIFIAIISVLIFCLCTFLSKAKTPPIETEKPRTGSAISTVGSLPHPTSTRFIAYEELKEATNNFEPASVLGEGGFGRVFKGVLNDGTHVAIKRLTNGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYFSNRDSSQNVLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPTGQENLVTWARPILRDKDRLEEIADPRLGGKYPKEDFVRVCTIAAACVALEANQRPTMGEVVQSLKMVQRVTEYQDSVLASSNARPNLRQSSSTFEFDGTSSMFSSGPYSGLSAFDNDNISRTVVFSEDLCEGR* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1866 720 ProSiteProfiles Protein kinase domain profile. 376 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1866 720 SUPERFAMILY Protein kinase-like (PK-like) 350 653 IPR011009 -
Gso3g1866 720 CDD STKc_IRAK 382 652 - -
Gso3g1866 720 Pfam Protein kinase domain 379 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1866 720 PANTHER OS01G0750732 PROTEIN 8 720 - -
Gso3g1866 720 Gene3D Transferase(Phosphotransferase) domain 1 454 672 - -
Gso3g1866 720 MobiDBLite consensus disorder prediction 273 298 - -
Gso3g1866 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Gso3g1866 720 Gene3D Phosphorylase Kinase; domain 1 357 453 - -
Gso3g1866 720 MobiDBLite consensus disorder prediction 270 298 - -
Gso3g1866 720 ProSitePatterns Protein kinases ATP-binding region signature. 382 404 IPR017441 GO:0005524
Gso3g1866 720 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 8 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1866 Gso-Chr3 44216653 44224398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1866 12 720 Receptor kinase-like Gene Family AT4G02010 68.073 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gso3g1866 Pkinase 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1866 - - gmx:100793528 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1828 19 47002556 47009229 Gso3g1866 3 44216653 44224398 GST
Gso3g1866 3 44216653 44224398 Gso2g0100 2 1063646 1071803 PCT
Gso3g1866 3 44216653 44224398 Gso10g0104 10 1120582 1127688 PCT
Gso2g0100 2 1063646 1071803 Gso3g1866 3 44216653 44224398 PCT
Gso10g0104 10 1120582 1127688 Gso3g1866 3 44216653 44224398 PCT