Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1862 ATGGACAATAATACTAGTGCCTGTGCCTACCCCCAACTTGAGTCAGAAGAAGCATCTTCAGAGCACAAATCAGAAACTCAAACATCAAAGAAAAGGAAAATGGTTGAGAAAACAGTTGTGGCAGTGAGGGTAGGAGAGAAGGTTGGCAAGCTAAAGAATGAAGGGCTACCCTCAGATTTTTGGTCTTGGAGGAAATATGGACAAAAACCAATCAAAGGGTCTCCATATCCAAGGGGCTATTACAAGTGCAGCACATCCAAAGGTTGTTCAGCCAAAAAGCAAGTAGAGAGATGCAGAACGGATGCTTCAATGCTCATAATCACATATACCTCTACACATAACCATCCATGTCCCACTCCCATCACTACAAAATCTACCACCACAAAGGAGGAAGACCAAGAACATATAGAACTAGAAGAAGAAGAAGAGCAAAGGGATAATAATAATAATAAGCCCAGTGATGAAGTTACAAATGAAGAAAATTTTCATTACTTGCAATCTCCAATACGTTGCTCCAGCCAAGATATCATTATAGAACAAGAAGATCCTTTCAAACTAAACACGGAGAAAAGCCATGACCGAATGGATCTCCTCTTAGAGGAAGAGCCTCTTTGTTTTGCACAGCTCAAGAACTTGTCTGCTTCCAAAAACGAAGAACTTGACTTTTTCGATGAGCTTGAGGAGTTACCCATGTCTTCATCTTTGTTGCACTTTACGAGGAACATTTTTTCCGATGAAAGGATTCCCGTTGGCCCTTCTTGA 762 0.4094 MDNNTSACAYPQLESEEASSEHKSETQTSKKRKMVEKTVVAVRVGEKVGKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYKCSTSKGCSAKKQVERCRTDASMLIITYTSTHNHPCPTPITTKSTTTKEEDQEHIELEEEEEQRDNNNNKPSDEVTNEENFHYLQSPIRCSSQDIIIEQEDPFKLNTEKSHDRMDLLLEEEPLCFAQLKNLSASKNEELDFFDELEELPMSSSLLHFTRNIFSDERIPVGPS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1862 253 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 237 IPR044810 GO:0003700
Gso3g1862 253 Gene3D WRKY domain 43 119 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g1862 253 SUPERFAMILY WRKY DNA-binding domain 55 118 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso3g1862 253 SMART WRKY_cls 57 117 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1862 253 MobiDBLite consensus disorder prediction 16 34 - -
Gso3g1862 253 ProSiteProfiles WRKY domain profile. 52 118 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso3g1862 253 PANTHER WRKY TRANSCRIPTION FACTOR 69-RELATED 16 237 - -
Gso3g1862 253 MobiDBLite consensus disorder prediction 142 156 - -
Gso3g1862 253 MobiDBLite consensus disorder prediction 1 34 - -
Gso3g1862 253 MobiDBLite consensus disorder prediction 116 156 - -
Gso3g1862 253 Coils Coil 131 151 - -
Gso3g1862 253 Pfam WRKY DNA -binding domain 59 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1862 Gso-Chr3 44198502 44200386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1862 2 119 WRKY Transcription Factor Family AT2G34830 55.462 2.42e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso3g1862 WRKY 4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1862 - - gmx:100127423 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1826 19 46984426 46986347 Gso3g1862 3 44198502 44200386 GST