Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1854 ATGGCATCACCGATCCAACAACAACAACGCTCGACTACTACAAGTTCTGGATCTGAAGGAGGAGATCCGCAAATCATCGATGAGAGGAAGCGGAAGAGGATGCTGTCGAACCGCGAGTCGGCGCGGCGATCGCGGATGAGGAAGCAGAAACAGCTGGAGGATCTGACCGATGAAGTTAGCAGATTGCAAAGCGCGAACAAGAAGCTTGCGGAGAACATAGAGGCCAAGGAAGAAGCGTGCGTCGAGACCGAAGCGGCGAACAGCATTCTGAGAGCACAGACAATGGAACTGGCCGATCGATTGCGCTTCTTGAACTCCATCCTTGAGATCGCTGAAGAGGTCGAAGGGTTATCCGTTGAGATTCCCGAGATTCCAGATCCTCTCCTCAAGCCCTGGCAGATTCCTCATCCGATACAACCGATTATGGCCACCGCAAACATGTTTCTGCGTTGA 453 0.5276 MASPIQQQQRSTTTSSGSEGGDPQIIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEVSRLQSANKKLAENIEAKEEACVETEAANSILRAQTMELADRLRFLNSILEIAEEVEGLSVEIPEIPDPLLKPWQIPHPIQPIMATANMFLR* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1854 150 MobiDBLite consensus disorder prediction 23 58 - -
Gso3g1854 150 Coils Coil 38 86 - -
Gso3g1854 150 SMART brlzneu 25 89 IPR004827 GO:0003700|GO:0006355
Gso3g1854 150 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 32 47 IPR004827 GO:0003700|GO:0006355
Gso3g1854 150 Gene3D - 27 84 - -
Gso3g1854 150 CDD bZIP_plant_GBF1 30 80 IPR045314 GO:0003700|GO:0006355
Gso3g1854 150 PANTHER BZIP TRANSCRIPTION FACTOR 44 8 148 - -
Gso3g1854 150 MobiDBLite consensus disorder prediction 1 58 - -
Gso3g1854 150 Pfam bZIP transcription factor 29 80 IPR004827 GO:0003700|GO:0006355
Gso3g1854 150 SUPERFAMILY Leucine zipper domain 29 77 IPR046347 GO:0003700|GO:0006355
Gso3g1854 150 MobiDBLite consensus disorder prediction 1 21 - -
Gso3g1854 150 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 27 74 IPR004827 GO:0003700|GO:0006355
Gso3g1854 150 PANTHER BZIP TRANSCRIPTION FACTOR 53 8 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1854 Gso-Chr3 44149446 44150597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1854 9 148 bZIP Transcription Factor Family AT3G62420 52.857 1.15e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso3g1854 bZIP_1 3.7e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1854 K25786 - gmx:780550 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1819 19 46932277 46933490 Gso3g1854 3 44149446 44150597 GST
Gso3g1854 3 44149446 44150597 Gso2g0110 2 1130396 1131606 PCT
Gso3g1854 3 44149446 44150597 Gso10g0116 10 1226536 1227684 PCT
Gso2g0110 2 1130396 1131606 Gso3g1854 3 44149446 44150597 PCT
Gso10g0116 10 1226536 1227684 Gso3g1854 3 44149446 44150597 PCT