Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1852 ATGGTGATGCACATAGAGCACCACGTGATTTTGAATTCAGAATATGTTCTCTCTCAATTCCAATCCGAAATTGAGCATTCGGCCGGACTGATACACCCTATAAATTCGTCCTCAACCAATTTTGCAAAACTTTTGAGTTCAACTCTCCAAGATACTAACCTTTCATTCTCTGATATCAAGACCAAGGTGGCTCCGTTATTATTTAAAGCATTTGAGACGGTTCCTAACTTAGCCCAAATTTCATACATAGAAAAGAAAGGTTTATTTTTCTCATACTACACTGATTATGGTCAAGTTTTGGCAATGTACTCAAACTCATCATCACTTTCCACTTCTTTTGGGGGTGCCTCAAATTTAAGCATATATTATATCCAGCCCGTAAATCGTGACACTGGAGAGTTATATGGGAAAGCCATAATATCTGAAGTACCATCTAATATTATCAATACAAGTTGGTTTGTGAAAGCAGTTAATAGTTCACTTAGTTATGCCTCATTGGGAACCAAGTGGAACAATGATCATGATCTTCTATTCGTTAGTTCATCTAGAATAAAGGGGACACAAGTGATCTCTCTAGGCATTCCAGTAACAACTATCACTGATTTCTTCACTCCGGTTGGGGCGAATTTGTCTTTGGTTACCAAAGATGGAAAAATGCTTGTAGAAGGGATTCAAAATACTCGTTTGGGCTTCTCTAATGACATGGTTTATTTCCAATCAGTGAATGCAAATGGTGATCAAACAAGTTATGACGGCGTTGTTTCATGCAAAGATGGAGATGCAGAAGCTGCCTCTATTTTGAATATTCAGGGTGTTGAGTATTTAATTCGCTGCTCCACCATTGATATAATGGAAATAAAATCGGTGTATGTTTTGGCTGTCCCACGAAAAGGATTGGACCACTTTGTTCTGGACATTAAGAAAAAAGGATTGGCACTATTGACAACAATGATTGTCATGATACTCATTGCCATGGTCAGTTTTCTATACATAAATGTTAGATCATTAAGGCGAGAAATGCATTTGTGTTGGTCACTCATCAAACAAAATGAAGCCACACAACAAGCTGAGCGAAAATGTATGAACAAGAGCCTTGCTTTTGCTAGTGCCAGCCATGATGTTCGCGCTTCGCTGGCGGGCCTTACTGGTTTGATAGAAATGTCCTTTCATGAAGTTTCTCCTGATTCTGAATTAGGAACCAACTTAAGACAAATGGATTCTTGTACCAAAGATTTACTAGGACTATTGAATTCTATACTTGATGCAAGTAAAGTTGAAGCTGGCAAAATGCTGCTTGAGGAAGAGGAATTTGATGTATTTCAACTCCTTGAAGATGTGGTTGATTTATACCATTCTGTGGCTATGAAGAAAGGAGTAGATATTGTGTTGGACCCTTGCAATGGTTCTGTACTCAGATATTCGCGCACGAAAGGCGACAGAGGAAAACTCAAACAAGTTTTGTGCAATTTACTGAGCAATGCTGTTAAATTTACCGAGGAGGGGCACATAGCTGTTCGAGCATGGGCTCAGAAGCCAAGCTTGCAGAGCTCAATGATTGCTACTCACCAATACGGGTCCAGTAGACTTTTGTCGCGCTTGTGTTGCCGCCAAAATGAAGCACGTGATGACGTGGAAGACTTGAACATCCAACAAGATCCAAATTGTATGGATTTTACTATTGAAGTGGATGACACTGGCAAAGGAATTCCTAAAGAGAAGCACAAGTCTGTTTTTGAAAATTATGTCCAAGTCAAAGAAACTACTCTTGGCCAAGAAGGAACTGGCTTGGGACTTGGTATTGTTCAGTCACTGGTACGTTTGATGCATGGAGATATTGAAATCATGGACAAGGATATTGGTGAAAAGGGAACCTGCTTTAGGTTCAATGTTCTCCTCACTGCCCATGAGACACAGATGAATGATGACACAGGAGATGACCAAGCTGGATCAGGTAACAAAAATCAATCTCATGGACTAACCATGAGTCCCAAGTTATCTATTTGGACCCGTAGTCCTAGATCCGAGGCTTCTCGAGTTGTTTTATTGATTCAAAATGAGGAGCGTCGAGGGACTACGCAGAGGTTCATGGAGAGGTTAGGGATCAAAGTTAAGGTTGTGAAGGAGTGGAGACAACTTCATTACACTCTGAAGAAGATCATCAAACAAAAGGGTCTCCATCCAAATAGCTCAAGCTCGCCAGAGTCTTCAGATTCTCCCTCTGCATCAAGCTGCACAAACGGAGTCCCTTTGAGTGCACAAGATGGAACTAATTACATAAGTTCAATCTTCAAGAGAACAGATATTGAAGCTTCCTCGGGTTTTGTCCTGATTGTGATTGATGCTAATGCAGGACCTTTTTCAGAGCTTTGCAAAGTGGTAGCTGAGTTCAAAAGAGGCCTTTGTTATCCTTGTAGGGTGGTTTGGTTGGAGAATCCACTTATACCTTCTGTGGACAACAAAATCCTTAACAAGGATGTTTCTAATTCTAATGACATTGTCTTGTCTAAGCCACTTCATGGTCATCGTTTATTCCAAGTCATAAGGATTCTCCCCGAGTATGGAGGTGTTTGGCCATGCAGTTCTAGTGAAACAAAGAAAGAAAAGGGTCAAGTTTCCTTAACTGATGAAGGTGCAATTCGACGTGTTGAACTACAAGAGTGTGGCAGCTCAAGCGTTACACAGCAATCTTATGATAGATCTAGAGCAAGAAAATCTCATATCCACCAAGGAGAAATACAAGAATGTGAAGAGTTAAGCAATGAAAAACCCTTGTGGGGTATGAAATGTTTGGTTGTTGAGGACGTTGTTTTGTTACGTAGGATAACTAAGTCTACTCTTGATCGGCTTGGTGCTTCTGTCATGGAATGTGAGAATGGTGAACAAGCTGTTCAGACAGTTGAAGAGGGTCTAACTAGGAATTCTTCCAATCGTCCATGTGATTTCATCTTAATGGACTGCCAGATGCCGGTAATGGATGGATATGAGGCAACGAGACGGATAAGGGAGATTGAGAAGTCTCATGGTGTTCACATTCCTATCTTTGCATTAACAGCTAATACAGGGAAAGAGGCAATATTGTCCATTGAAGCTGGAATGGACGATCACTTAATCAAACCCATCAACAAAGAGGCTTTACTTAAAGCCATCAAAAGAATATATACTAAAGAGTGA 3171 0.4043 MVMHIEHHVILNSEYVLSQFQSEIEHSAGLIHPINSSSTNFAKLLSSTLQDTNLSFSDIKTKVAPLLFKAFETVPNLAQISYIEKKGLFFSYYTDYGQVLAMYSNSSSLSTSFGGASNLSIYYIQPVNRDTGELYGKAIISEVPSNIINTSWFVKAVNSSLSYASLGTKWNNDHDLLFVSSSRIKGTQVISLGIPVTTITDFFTPVGANLSLVTKDGKMLVEGIQNTRLGFSNDMVYFQSVNANGDQTSYDGVVSCKDGDAEAASILNIQGVEYLIRCSTIDIMEIKSVYVLAVPRKGLDHFVLDIKKKGLALLTTMIVMILIAMVSFLYINVRSLRREMHLCWSLIKQNEATQQAERKCMNKSLAFASASHDVRASLAGLTGLIEMSFHEVSPDSELGTNLRQMDSCTKDLLGLLNSILDASKVEAGKMLLEEEEFDVFQLLEDVVDLYHSVAMKKGVDIVLDPCNGSVLRYSRTKGDRGKLKQVLCNLLSNAVKFTEEGHIAVRAWAQKPSLQSSMIATHQYGSSRLLSRLCCRQNEARDDVEDLNIQQDPNCMDFTIEVDDTGKGIPKEKHKSVFENYVQVKETTLGQEGTGLGLGIVQSLVRLMHGDIEIMDKDIGEKGTCFRFNVLLTAHETQMNDDTGDDQAGSGNKNQSHGLTMSPKLSIWTRSPRSEASRVVLLIQNEERRGTTQRFMERLGIKVKVVKEWRQLHYTLKKIIKQKGLHPNSSSSPESSDSPSASSCTNGVPLSAQDGTNYISSIFKRTDIEASSGFVLIVIDANAGPFSELCKVVAEFKRGLCYPCRVVWLENPLIPSVDNKILNKDVSNSNDIVLSKPLHGHRLFQVIRILPEYGGVWPCSSSETKKEKGQVSLTDEGAIRRVELQECGSSSVTQQSYDRSRARKSHIHQGEIQECEELSNEKPLWGMKCLVVEDVVLLRRITKSTLDRLGASVMECENGEQAVQTVEEGLTRNSSNRPCDFILMDCQMPVMDGYEATRRIREIEKSHGVHIPIFALTANTGKEAILSIEAGMDDHLIKPINKEALLKAIKRIYTKE* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1852 1056 CDD REC_hyHK_CKI1_RcsC-like 930 1049 - -
Gso3g1852 1056 Gene3D - 904 1055 - -
Gso3g1852 1056 MobiDBLite consensus disorder prediction 639 667 - -
Gso3g1852 1056 Gene3D - 345 429 - -
Gso3g1852 1056 SUPERFAMILY CheY-like 924 1053 IPR011006 -
Gso3g1852 1056 PANTHER TWO-COMPONENT HISTIDINE KINASE 4 1052 - -
Gso3g1852 1056 CDD HisKA 363 424 IPR003661 GO:0000155|GO:0007165
Gso3g1852 1056 PANTHER HISTIDINE KINASE CKI1-LIKE 4 1052 - -
Gso3g1852 1056 Pfam Response regulator receiver domain 930 1050 IPR001789 GO:0000160
Gso3g1852 1056 ProSiteProfiles Response regulatory domain profile. 928 1053 IPR001789 GO:0000160
Gso3g1852 1056 SMART HisKA_10 362 428 IPR003661 GO:0000155|GO:0007165
Gso3g1852 1056 MobiDBLite consensus disorder prediction 724 749 - -
Gso3g1852 1056 Gene3D - 430 638 IPR036890 -
Gso3g1852 1056 ProSiteProfiles Histidine kinase domain profile. 369 634 IPR005467 -
Gso3g1852 1056 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 417 629 IPR036890 -
Gso3g1852 1056 SMART HKATPase_4 478 634 IPR003594 -
Gso3g1852 1056 PRINTS Bacterial sensor protein C-terminal signature 558 572 IPR004358 GO:0016310|GO:0016772
Gso3g1852 1056 PRINTS Bacterial sensor protein C-terminal signature 576 586 IPR004358 GO:0016310|GO:0016772
Gso3g1852 1056 PRINTS Bacterial sensor protein C-terminal signature 592 610 IPR004358 GO:0016310|GO:0016772
Gso3g1852 1056 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 478 633 IPR003594 -
Gso3g1852 1056 SMART REC_2 927 1049 IPR001789 GO:0000160
Gso3g1852 1056 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1852 Gso-Chr3 44131604 44139332 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1852 13 1055 Histidine Kinase Gene Family AT2G47430 39.462 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso3g1852 HATPase_c 2.4e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1852 - - gmx:100790376 2058.11