Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1851 ATGGCAGAGGTTGTCTTGCTAGTCGATGATTTGAAACTACTTTCTGCGATTCCTCGCTGTAGAATTTGTCATGAAGAAGAGTTTGAAAGCGTAGAAACCTTGGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATACGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAATGATGAAGCAATGTCTATTAGGGAGGAGGAAGAAGCGTCAAACGCAAGAATAGAGATTATGGTTGAAGGAGTGGCAATGGAAAGCGATTACTCCGAATGCAGCTCTGCCGCTGACAGAAGCGGGTCTTGCTGTCGATCACTTGCAATAGCTTTTACACTAGTCTTACTTGTAAGACATCTTTTCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTGTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATTAAGATTCTCGGAGCTATTCAGAGTTGTATTCAGCACTATAAGGATGCTGACGAAGATGACGAAGATGAGATACATCATAATGTAAATCCAAGACATTTATAG 642 0.4034 MAEVVLLVDDLKLLSAIPRCRICHEEEFESVETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTAPPPKKSKINDEAMSIREEEEASNARIEIMVEGVAMESDYSECSSAADRSGSCCRSLAIAFTLVLLVRHLFPVLTNGTEDYPFTLLTVIILKASGIIIPMYIIIKILGAIQSCIQHYKDADEDDEDEIHHNVNPRHL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1851 213 SMART ringv_2 19 68 IPR011016 GO:0008270
Gso3g1851 213 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Gso3g1851 213 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Gso3g1851 213 CDD RING_CH-C4HC3_MARCH 20 67 - -
Gso3g1851 213 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 202 IPR033275 -
Gso3g1851 213 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 202 - -
Gso3g1851 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 77 IPR013083 -
Gso3g1851 213 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Gso3g1851 213 Pfam Protein of unknown function (DUF3675) 73 182 IPR022143 -
Gso3g1851 213 SUPERFAMILY RING/U-box 19 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1851 Gso-Chr3 44122949 44125246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1851 20 67 C3H Transcription Factor Family AT2G37950 42.857 4.90e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1851 - - gmx:100802379 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1816 19 46900921 46903166 Gso3g1851 3 44122949 44125246 GST
Gso3g1851 3 44122949 44125246 Gso2g0113 2 1168410 1171671 PCT
Gso3g1851 3 44122949 44125246 Gso10g0119 10 1257554 1260908 PCT
Gso2g0113 2 1168410 1171671 Gso3g1851 3 44122949 44125246 PCT
Gso10g0119 10 1257554 1260908 Gso3g1851 3 44122949 44125246 PCT