Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1843 ATGGTAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGAAGGTGGACAGAGGAGGAAGATGATATTTTGACCAAGTACATTCAGGCCAATGGAGAAGGTTCGTGGAGATCATTGCCGACAAATTCAGGATTGTTGAGATGTGGGAAGAGTTGCAGGCTAAGGTGGATTAACTATCTGAGAGCCGATCTCAAAAGAGGGAACATTTCTTTTGAGGAGGAAAGTATCATTCTGAAGTTGCATGCTTCGTTTGGCAACAGGTGGTCGTTGATAGCAAGTCACTTGCCCGGAAGAACAGACAACGAGATAAAAAACTACTGGAACTCTCACTTGAGCAGAAAAATTTACACATTTCATGGGACAACTTCGTCTTCTAAAGACATCATCATTACCCTACCTCCTAGGCGCAAACGTGGTAGGTCCAGCCGCTGGGCCATGAAGAAGAACAAACAACAACAAATTCACACTACTCACAATAACGAAGTAGCAGTTCCTCTCCCTCCAACCCCGCCACTAATTGAGACCGAGAAATATTTGTCCACCAATATAATGTTAATGGAGGAACAATTTGATGGGTCGTCGACTGCTAGTACAATAACCCATCAACATGAAAATAACATTAATACTACTCAAGAAGAAGAAGAAGAACAAAACGAAGGTGTTGAAGAAGGTGAGAAAGAAGAAATAATAAATGAAGACATATGGGGACCGTGTGATGAGGAAGTTATTAACGGGGGAGAGGTAGTGTTGAATTTTGATGATATCATGGACAATTGTTACTTTCAGGAAGCAAGTGGGGTTTGGACCATTTCTGATCATGAACAAAGGGAGAGCAATGATAATATTAATGTGGCGGGGAATGAAAAAGGTGTTGACGACACGTGTACCAACATAGTGATGTCTAGTGGGGATGATGATCAGTTGCATTCTTCCTCTTTCATGGCTTCGGGCTTGGATCAAAACCTCCTCACTTGGCTGTGGGAAGATGAAGACTGGGACACGGATCTTCAGAGCCTTGGAGAGATTCATAGTGACAAATTAAAAGCTATGGTTGATTGGTTTCTCTCTTCAAGTTAA 1080 0.4241 MVRAPCCEKVGLKKGRWTEEEDDILTKYIQANGEGSWRSLPTNSGLLRCGKSCRLRWINYLRADLKRGNISFEEESIILKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYTFHGTTSSSKDIIITLPPRRKRGRSSRWAMKKNKQQQIHTTHNNEVAVPLPPTPPLIETEKYLSTNIMLMEEQFDGSSTASTITHQHENNINTTQEEEEEQNEGVEEGEKEEIINEDIWGPCDEEVINGGEVVLNFDDIMDNCYFQEASGVWTISDHEQRESNDNINVAGNEKGVDDTCTNIVMSSGDDDQLHSSSFMASGLDQNLLTWLWEDEDWDTDLQSLGEIHSDKLKAMVDWFLSSS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1843 359 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso3g1843 359 Gene3D - 11 67 - -
Gso3g1843 359 Gene3D - 71 116 - -
Gso3g1843 359 CDD SANT 16 61 IPR001005 -
Gso3g1843 359 PANTHER MYB TRANSCRIPTION FACTOR 2 309 - -
Gso3g1843 359 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso3g1843 359 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso3g1843 359 SMART sant 13 63 IPR001005 -
Gso3g1843 359 SMART sant 66 114 IPR001005 -
Gso3g1843 359 Coils Coil 208 228 - -
Gso3g1843 359 MobiDBLite consensus disorder prediction 204 228 - -
Gso3g1843 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso3g1843 359 CDD SANT 71 112 IPR001005 -
Gso3g1843 359 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso3g1843 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso3g1843 359 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 309 - -
Gso3g1843 359 MobiDBLite consensus disorder prediction 212 228 - -
Gso3g1843 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1843 Gso-Chr3 44042349 44046468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1843 1 152 MYB Transcription Factor Family AT5G49330 64.118 1.00e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso3g1843 Myb_DNA-binding 1.6e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1808 19 46799340 46803716 Gso3g1843 3 44042349 44046468 GST
Gso3g1843 3 44042349 44046468 Gso2g0121 2 1258719 1263142 PCT
Gso3g1843 3 44042349 44046468 Gso10g0130 10 1349130 1354016 PCT
Gso2g0121 2 1258719 1263142 Gso3g1843 3 44042349 44046468 PCT
Gso10g0130 10 1349130 1354016 Gso3g1843 3 44042349 44046468 PCT