Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1830 ATGGCGGCAGAGGCGGCTTTGTTCTTTTCTGTGGCATCAGTGGTGGAGGACGTGCTTCAGCAGCACGGTCCTCGCCTCAAAGATCTTGATTTGGAATCTAGGAAAGCCGAAGAAGCTGCATCAAGAAGATACGAAGCTGCGGGGTGGTTGAGAAAAATGGTTGGAGTTGTTGCAGCCAAAGATTTACCAGCAGAACCCTCTGAGGAAGAGTTTAGGCTTGGTTTGAGGAGTGGGATTATTCTCTGTAATGTTATTAATAAAGTTCAATCCGGGGCGGTACCCAAGGTTGTGGAGAGTCCTGTTGATTCTGCATTGATCCCTGATGGGGCACCATTAACGGCATATCAGTATTTTGAAAACGTGAGGAATTTTCTGGTGGCTGTCCAAGAAATTGGAATTCCTATCTTTGAGGCATCTGATCTGGAACAAGGAGGAAAATCATCTAGGATTGTCAATTGCGTGTTGGCCCTGAAATCCTACAGTGAATGGAAAATGAGCGGGTCAAATGGTGTGTGGAAATTTGGTGGAAATCTCAAACCAACTGTGTCTGCAAAATCTTTTGTGAGAAAAAATTCGGATCCATTTACTAATTCCTTGTCAAGGACTTCGTCGCTCAATGATAAATCTATTGCTGCTCTTAATTCTGATGTTGAGAATATTAAAATGTCTGGTTCCCACTCTTTGAGTATGCTTGTTCGGGCAATTTTATCAGATAAGAAGCCAGATGAAGTTTCAACGTTGGTTGAATCTGTTTTAAACAAAGTTGTAGAGGAGTTTGAGCAACGAATTGCAAGCCAAGGTGAACAGACAAAAGTAACTTCAAGAGATCCTGTTTCTCAGAGCAACGGGTCTGCCATGGCAGATAAAAAGGGGGAGAAGAAGATTCATGTGGCAACGAAAAAAGAGGATTACATTCATAAAAATCAAGTTGCTACTATGGTAACAACAAAAAAAGAGGGCCACAGTCATAAAAATCAAGTTGCTGATGAGGAATCACAAAGGCAACTTATGAAGCAGAAAATGCTCTTCGACCAGCAGCAAAGAGAAATTCAGGAGCTAAGGCATACTCTTCACTCCACAAAAGATGGTATGCAGTTCATGCAAATGAAATTTCATGAGGAGTTCTCCAATCTTGGCATGCACATTCATGGCTTAGCTAATGCTGCTTCTGGATATCATAGAGTTCTTGAAGAAAATCGCAAACTATACAATCAAGTCCAGGATCTTAAGGGAAGTATTAGGGTGTACTGTCGTGTAAGACCCTTCTTTCCTGGACAAGCAAACCATTTGAGTGCAGTGGAAAATATAGAAGATGGAACTATCACAGTTAATATTCCTTCAAAGAATGGGAAGGGACGCAGGTCCTTCAACTTTAACAAAATCTTTGGACCATCTGCAACCCAAGCCGAGGTCTTCCTAGATATGCAGCCACTCGTTAGGTCTGCTCTTGATGGTTTTAATGTTTGCATATTTGCATATGGCCAAACAGGATCAGGAAAAACCTACACTATGACTGGACCAAAAGAGATCACAGAGAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGTGATTTGTTTCTTATAGCAGATCAAAGGAGGGACACTTTCCACTATGACGTTTCTGTTCAAATGATTGAGATTTACAATGAGCAAGTCAGGGATCTGCTGGTCACTGATGGAACAAACAAAAGATTAGAAATTCGAAGTAGTTCTCAAAAAGGACTCAGTGTGCCAGATGCAAGCCTTGTTCCTGTATCATCTACTATTGATGTTATTGAACTAATGAACCTTGGGCAAAGGAACCGTGCAGTTGGAGCAACAGCCCTTAATGACCGCAGTAGCCGATCTCATAGTTGCTTGACTGTTCATGTTCAGGGAAGAGATTTGACATCTGGAGCTATCCTTCGTGGTTGCATGCATTTGGTTGACTTGGCAGGAAGTGAGAGGGTGGATAAATCTGAGGCCACAGGAGATAGACTAAAAGAAGCACAGCATATTAACAAATCTCTTTCAGCTTTGGGAGATGTCATTGCTTCCCTTGCTCAGAAAAACTCACACGTACCTTACAGAAATAGTAAACTCACACAACTACTCCAAGATTCACTTGGAGGACAGGCCAAGACACTAATGTTTGTTCACATAAGTCCAGAGAGTGATGCTATTGGAGAAACAATTAGTACCTTAAAATTTGCTGAAAGAGTTGCCACAGTTGAACTTGGTGCTTCTCGAGTAAACAAAGATAGTGCAGATGTTAAAGAGCTCAAAGAACAGATTGCCAGCCTCAAGGCAGCACTGGCAAGAAAGGAAGGAGAATCAGAACATTCTTTTTCCAGCAGCTCTGAAAAATACAGAACAAAAGCTAGTGAGCTATCACCTTATCATATAAACCAGCGAGATCCTGACACTGTGGATCAGCTTGGTTGCCGGCAACCAATGGTTGAGGTTGGCAACATAGAACTTCAGAGTAATACCACAGTGAGGCACAAAACTCAGAGCTTTGATTTCGATGAGATATCAGCAAATTCACCACCATGGCCCCCAGTGAACAATAGTCTTGCACAAAACTATGGGGAGGATGACAAAGAAAGTGGTTCTGGTGAATGGGTTGACAAGGTCATGGTCAACAAGCAAGATGTAAACAAAACTGAGAACCTCTTGGGGTGTTGGCAAGCAGCAAACAATGGGAACTTATCTGAGGCCTTTTATCAGAAATATATAGAAGATTCTCCCAAAATGTACTCGGAACAATCCTATACTATGTTCATGGGAGCCAACCAGTTTAACATTGCGGGTTCTGATGACATCATGGATGAGCTTGATGCTGCAACCAGTGATTCCTCAGAACCTGACTTACTTTGGCAATTTAATCATTCCAAACTTAGCAGCGTGACCAATGGAATTGGATCAAAGACTATGAGATCTATCTCAAAGGCAGCAAAAAACAGCCCTGAGTTGAGCAAGAATGCTGTTCATTCTTCTCCTCTAGGTCCTTCACCTTCATTGAAAAACTCAAATGGTGTCCCACATCGATCAGGAAGGCATCCGGCTCCAGTTGACGTGAAACGTAGAACTGGGAATAGAAAATAA 3087 0.4214 MAAEAALFFSVASVVEDVLQQHGPRLKDLDLESRKAEEAASRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVINKVQSGAVPKVVESPVDSALIPDGAPLTAYQYFENVRNFLVAVQEIGIPIFEASDLEQGGKSSRIVNCVLALKSYSEWKMSGSNGVWKFGGNLKPTVSAKSFVRKNSDPFTNSLSRTSSLNDKSIAALNSDVENIKMSGSHSLSMLVRAILSDKKPDEVSTLVESVLNKVVEEFEQRIASQGEQTKVTSRDPVSQSNGSAMADKKGEKKIHVATKKEDYIHKNQVATMVTTKKEGHSHKNQVADEESQRQLMKQKMLFDQQQREIQELRHTLHSTKDGMQFMQMKFHEEFSNLGMHIHGLANAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFFPGQANHLSAVENIEDGTITVNIPSKNGKGRRSFNFNKIFGPSATQAEVFLDMQPLVRSALDGFNVCIFAYGQTGSGKTYTMTGPKEITEKSQGVNYRALSDLFLIADQRRDTFHYDVSVQMIEIYNEQVRDLLVTDGTNKRLEIRSSSQKGLSVPDASLVPVSSTIDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGAILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPESDAIGETISTLKFAERVATVELGASRVNKDSADVKELKEQIASLKAALARKEGESEHSFSSSSEKYRTKASELSPYHINQRDPDTVDQLGCRQPMVEVGNIELQSNTTVRHKTQSFDFDEISANSPPWPPVNNSLAQNYGEDDKESGSGEWVDKVMVNKQDVNKTENLLGCWQAANNGNLSEAFYQKYIEDSPKMYSEQSYTMFMGANQFNIAGSDDIMDELDAATSDSSEPDLLWQFNHSKLSSVTNGIGSKTMRSISKAAKNSPELSKNAVHSSPLGPSPSLKNSNGVPHRSGRHPAPVDVKRRTGNRK* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1830 1028 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 1025 - -
Gso3g1830 1028 MobiDBLite consensus disorder prediction 1014 1028 - -
Gso3g1830 1028 SMART kinesin_4 410 745 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1830 1028 MobiDBLite consensus disorder prediction 976 1028 - -
Gso3g1830 1028 PRINTS Kinesin heavy chain signature 485 506 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1830 1028 PRINTS Kinesin heavy chain signature 607 624 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1830 1028 PRINTS Kinesin heavy chain signature 638 656 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1830 1028 PRINTS Kinesin heavy chain signature 687 708 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1830 1028 ProSiteProfiles Calponin homology (CH) domain profile. 40 162 IPR001715 GO:0005515
Gso3g1830 1028 Coils Coil 744 771 - -
Gso3g1830 1028 SUPERFAMILY Calponin-homology domain, CH-domain 38 172 IPR036872 -
Gso3g1830 1028 MobiDBLite consensus disorder prediction 264 286 - -
Gso3g1830 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 769 IPR027417 -
Gso3g1830 1028 MobiDBLite consensus disorder prediction 264 293 - -
Gso3g1830 1028 Gene3D - 27 182 IPR036872 -
Gso3g1830 1028 Gene3D Kinesin motor domain 407 779 IPR036961 -
Gso3g1830 1028 SMART ch_5 42 160 IPR001715 GO:0005515
Gso3g1830 1028 Pfam Kinesin motor domain 418 736 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1830 1028 ProSiteProfiles Kinesin motor domain profile. 412 737 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso3g1830 1028 MobiDBLite consensus disorder prediction 976 1007 - -
Gso3g1830 1028 Pfam Calponin homology (CH) domain 41 162 IPR001715 GO:0005515
Gso3g1830 1028 CDD KISc_C_terminal 410 739 - -
Gso3g1830 1028 Coils Coil 336 356 - -
Gso3g1830 1028 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 2 1025 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1830 Gso-Chr3 43932788 43938804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1830 400 773 Calmodulin-binding Proteins AT5G65930 41.600 3.09e-78 278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1797 19 46702251 46710124 Gso3g1830 3 43932788 43938804 GST
Gso3g1830 3 43932788 43938804 Gso2g0133 2 1374820 1381577 PCT
Gso3g1830 3 43932788 43938804 Gso10g0586 10 6805603 6809484 PCT
Gso2g0133 2 1374820 1381577 Gso3g1830 3 43932788 43938804 PCT
Gso10g0586 10 6805603 6809484 Gso3g1830 3 43932788 43938804 PCT