Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1820 ATGGCATTCAATAGCTTGTACTTTCTTATGCTCTGTGTTTCCCTTGTGCTATCCTTCCTGACATCCATTTCCATAGCTGATAATAACCATGCAGTCGTTCCACCAGAAACCATATGCTACTCAACCTTAGATCCTTCTTACTGCAAATCTGTACTTGCAAATCAATACGGTAGCATATATGACTATTGCCGCATTTCTGTTCGAAAGTCCTTGTCTCAGTCTCGTAAGTTCTTGAACAACATGTATTCATATCTTCAAAATCCCTCTTCTTACTCTCAATCCACAATTCGTGCTCTTGAAGATTGTCAATTCCTTGCTGAACTAAACCTTGAGTACTTATCAACAACCCATGACACTGTTGATAAAGCCAGCGCTGTTCTTCCCACCTCTCAAGCAGAAGATGTTCACACATTGCTTAGTGCTGTTTTGACAAACCAACAAACTTGTCTAGATGGCCTACAAACTTCAGCTCCAGATCCAAGAGTGAAGAATGATCTTTCTTTACAACTCGCGGAAAATGCAAAGCTTGACAGTGTCTCCCTTTATTTGTTCACCAAGGCTTGGGATTCTGAGAACAAAACTTCAACGTCATGGCAAAACCAGAATGATCGTTTACCCTTGAAGATGTCAAACAAAGTACGTGCCATTTATGATTCCGCTAGAGGTCAGGGGAGAAAACTACTTCAAACAATGGATGATAATGAAAGCGTACTGGTGAGTGATATTGTGCTGGTTAGTAAGGATGGAAGTGGAAACTTTACCACTATCAATGATGCCATAGCTGCTGCACCAAATAACACAGCTGCTACCGATGGTTACTTCATTATTTTTATCTCTGAGGGTGTATATCAAGAGTATGTATCTATAGCCAAAAACAAGAAGTTCTTGATGCTAATTGGAGATGGAATCAATCGGACAATCATCACTGGCGATCACAACGTTGTTGATGGCTTTACAACTTTCAACTCTGCCACATTTGCTGTGGTAGCACAAGGATTTGTAGCAATGAACATAACATTCCGCAACATTGCTGGGCCAAGCAAGCACCAAGCAGTTGCAGTAAGAAATGGAGCGGATATGTCCACCTTCTATAGTTGTAGCTTTGAAGGGTACCAAGACACTTTGTACACGCATTCTCTGAGGCAGTTTTACCGTGAATGTGACATATATGGCACAGTTGACTTCATATTTGGAAATGCAGCTGTTGTTTTGCAAAACTGCAACATGTATCCCCGCCTCCCAATGAGTGGACAATTCAATGCCATCACAGCACAAGGTCGAACTGATCCAAATCAAAACACTGGCATTTCCATACAAAATGCAACCATAAAATCAGCACAGGATTTGGCTCCCGTGGTTGGTACTGTGGAAACATATCTTGGGAGGCCATGGAAGGAGTACTCAAGGACTGTTTATATGCAGTCTTTCATGGATAGTTTGATCGCTCCTTCTGGCTGGCATGAGTGGAATGGAAATTTTGCACTCAGCACTTTGTACTACGCAGAGTATGATAACACAGGTCCTGGTTCAAATACGGGCAACCGAATCAACTGGCCGGGCTATCATGTTATTAATGCTACTGATGCAGCTAGTTTTACTGTGTCTAACTTCTTGAATGGGGATGATTGGGTGCCTCAAACTAGCGTTCCATATCAGACATCTTTGTAA 1668 0.4185 MAFNSLYFLMLCVSLVLSFLTSISIADNNHAVVPPETICYSTLDPSYCKSVLANQYGSIYDYCRISVRKSLSQSRKFLNNMYSYLQNPSSYSQSTIRALEDCQFLAELNLEYLSTTHDTVDKASAVLPTSQAEDVHTLLSAVLTNQQTCLDGLQTSAPDPRVKNDLSLQLAENAKLDSVSLYLFTKAWDSENKTSTSWQNQNDRLPLKMSNKVRAIYDSARGQGRKLLQTMDDNESVLVSDIVLVSKDGSGNFTTINDAIAAAPNNTAATDGYFIIFISEGVYQEYVSIAKNKKFLMLIGDGINRTIITGDHNVVDGFTTFNSATFAVVAQGFVAMNITFRNIAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNMYPRLPMSGQFNAITAQGRTDPNQNTGISIQNATIKSAQDLAPVVGTVETYLGRPWKEYSRTVYMQSFMDSLIAPSGWHEWNGNFALSTLYYAEYDNTGPGSNTGNRINWPGYHVINATDAASFTVSNFLNGDDWVPQTSVPYQTSL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1820 555 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Gso3g1820 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 186 IPR035513 -
Gso3g1820 555 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 171 IPR006501 GO:0004857
Gso3g1820 555 Pfam Pectinesterase 243 541 IPR000070 GO:0030599|GO:0042545
Gso3g1820 555 Gene3D - 237 555 IPR012334 -
Gso3g1820 555 PANTHER PECTINESTERASE 14 554 - -
Gso3g1820 555 CDD PMEI-like_3 37 188 - -
Gso3g1820 555 SUPERFAMILY Pectin lyase-like 239 552 IPR011050 -
Gso3g1820 555 Pfam Plant invertase/pectin methylesterase inhibitor 36 174 IPR006501 GO:0004857
Gso3g1820 555 SMART PMEI_2 30 183 IPR006501 GO:0004857
Gso3g1820 555 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 14 554 - -
Gso3g1820 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 187 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1820 Gso-Chr3 43860778 43862802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1820 6 555 Carbohydrate Esterase AT4G02330 57.517 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1820 K01051 - gmx:100792847 1103.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1785 19 46612673 46614708 Gso3g1820 3 43860778 43862802 GST