Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1819 ATGGCTTCAAAGCTTTGTTTCTTAATACTATTTCTCATTCTCTTACCATTATTTGCTTCCTCAGAAACTGTTCCAAATCCCACCACTTCTGTCTCACCGGGAACTGCATGTAAATCCACCCCAGACCCATCCTATTGCAAATCCGTTCTCCCTCCCCAAAACGGTAACGTTTACGACTATGGTCGATTCTCTGTCAAAAAATCACTCTCACAAGCCCGCAAGTTCTTAAACCTAGTTGATAAATACCTCCAACGTGGTTCTTCTCTTTCCGCCACCGCAATCCGTGCACTTCAAGATTGTCGCACTCTCGGAGAACTCAACTTCGATTTTCTTTCTAGTTCCTTCCAAACAGTGAACAAGACAACGAGGTTTCTTCCTAGTTTTCAAGCTGATGATATCCAAACCTTACTCAGCGCCATCTTAACCAACCAGCAAACATGCTTGGACGGTCTCAAAGACACAGCTTCAGCTTGGAGCGTGAGAAACGGTCTCAGTGTTCCACTCTCCAACGACACCAAATTATACAGTGTCTCTCTCGCTCTCTTCATCAAGGGTTGGGTTCCCAGAACCAAAGCCAAAGCAATGCACCCTACCAAGAAACAACTTGGATTCAAAAACGGGCGTTTGCCGCTTAAGATGTCAAGCAGAACCCGCGCGATCTACGAGTCCGTGAGTAGGAGGAAGCTCCTTCAGGCCAAGGTGGGCGACGAGGTTGTGGTGAGGGATATTGTGACAGTGAGCCAAGATGGAAGTGGGAACTTCACCACTATCAATGATGCCATTGCCGCGGCTCCTAACAAATCTGTCTCCACAGATGGCTACTTCCTCATCTATGTAACTGCCGGTGTGTATGAGGAAAATGTGTCCATTGATAAGAAGAAGACGTATTTGATGATGGTCGGGGATGGTATCAACAAGACAATTATCACAGGCAATCGTAGTGTCGTTGATGGCTGGACAACCTTCAGCTCCGCAACACTTGCTGTGGTAGGGCAAGGATTCGTGGGTGTGAACATGACCATCCGCAACACCGCCGGGGCAGTGAAGCACCAAGCAGTTGCACTTCGAAGCGGAGCAGATTTGTCCACGTTTTACAGTTGCAGCTTTGAGGGATACCAAGACACACTATACGTACATTCCTTGAGACAATTCTACAGCGAATGCGACATCTTCGGCACGGTGGATTTCATCTTCGGAAACGCCAAGGTTGTCTTCCAAAATTGCAACATGTACCCTCGTCTCCCCATGAGTGGTCAATTCAACGCTATCACCGCACAGGGAAGAACAGACCCGAATCAAGACACAGGTATCTCAATCCATAATAGTACCATAAGAGCAGCTGATGATTTGGCTTCTAGCAACGGTGTTGCAACGTATCTGGGAAGGCCATGGAAGGAGTATTCTAGAACGGTTTATATGCAAACTTTCATGGACAGTGTGATCCACGCTAAGGGGTGGCGTGAATGGGACGGTGATTTTGCATTAAGCACTTTGTATTACGCAGAATACAGCAACAGTGGGCCAGGGTCTGGAACCGATAATAGAGTGACGTGGCCTGGTTATCATGTGATTAATGCCACCGATGCATCTAACTTTACTGTGTCCAATTTCTTGCTTGGGGATGATTGGTTACCACAGACAGGAGTGAGTTATACCAATAATTTGATATAG 1671 0.468 MASKLCFLILFLILLPLFASSETVPNPTTSVSPGTACKSTPDPSYCKSVLPPQNGNVYDYGRFSVKKSLSQARKFLNLVDKYLQRGSSLSATAIRALQDCRTLGELNFDFLSSSFQTVNKTTRFLPSFQADDIQTLLSAILTNQQTCLDGLKDTASAWSVRNGLSVPLSNDTKLYSVSLALFIKGWVPRTKAKAMHPTKKQLGFKNGRLPLKMSSRTRAIYESVSRRKLLQAKVGDEVVVRDIVTVSQDGSGNFTTINDAIAAAPNKSVSTDGYFLIYVTAGVYEENVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFSSATLAVVGQGFVGVNMTIRNTAGAVKHQAVALRSGADLSTFYSCSFEGYQDTLYVHSLRQFYSECDIFGTVDFIFGNAKVVFQNCNMYPRLPMSGQFNAITAQGRTDPNQDTGISIHNSTIRAADDLASSNGVATYLGRPWKEYSRTVYMQTFMDSVIHAKGWREWDGDFALSTLYYAEYSNSGPGSGTDNRVTWPGYHVINATDASNFTVSNFLLGDDWLPQTGVSYTNNLI* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1819 556 Pfam Plant invertase/pectin methylesterase inhibitor 35 181 IPR006501 GO:0004857
Gso3g1819 556 PANTHER PECTINESTERASE 12 554 - -
Gso3g1819 556 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 12 554 - -
Gso3g1819 556 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 181 IPR006501 GO:0004857
Gso3g1819 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 182 IPR035513 -
Gso3g1819 556 CDD PMEI-like_3 35 186 - -
Gso3g1819 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 184 IPR035513 -
Gso3g1819 556 Pfam Pectinesterase 244 541 IPR000070 GO:0030599|GO:0042545
Gso3g1819 556 SMART PMEI_2 28 181 IPR006501 GO:0004857
Gso3g1819 556 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Gso3g1819 556 Gene3D - 238 555 IPR012334 -
Gso3g1819 556 SUPERFAMILY Pectin lyase-like 240 552 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1819 Gso-Chr3 43852155 43854645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1819 1 556 Carbohydrate Esterase AT4G02330 63.589 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1819 K01051 - gmx:100792319 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1784 19 46604033 46606408 Gso3g1819 3 43852155 43854645 GST