Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1817 ATGATAATTAAGCGGAGTTTGAAAACTGGAATACAGAAGTGGAAACAGTGTAAGCCAGAGAACTGCGATAATTCCGCGATTCAGAAGAAGCGGAAGCCAGAGAACCGCGATAAATCCGCGGTTCAGAAGAAGCAGAGAGTAAACGAGGTTTCTTCTGCTGAAGGAGGAGCCTCTGGATCCTGTGAGGTGCAGTCCAATTCAAATTCCGTGGACTCGAATGGCACAATTCAAGACTTGGCCCCACAATCAGAAGAAAGGATTATTCAACCTCGTCCTTCCAGAGGTCGGGCTAAGAAGCTTCCCAGCAGGTTCAGTGATTCTTTTGTTTACGAACGCTTCGGGCTCGATGGCGAGGATAAGAATACTTTGCAAGACGTTGCTGCCAATGGAAATGAAAGAGATTCTCCTTGTTCTTCAAATTCTGCTGAGTCCGGTGATTTCAAGTACTTGGTTAAGACCGTTAAGATGACGGTGAACGGGGGTCGTAAGTTGTTGGTTAAAGAAAAGAGTAATGATGCGGCTGGACCTAGTTCAAATGCTGTGGGTGTGGAAGGAAATGGTAAAAAGAAAGACATTTTCAAATTAGATGATTTTATTTTGGGTGATATAGTTTGGGCAAAATGTGGGAAGAAGCATCCTGCTTGGCCTGCTATAGTCATTGATCCCCTCTTGCAAGCTCCCAAATCCGTCTTGAGCTGTTGTGTTCCTGGTGCACTTTGCGTTATGTTTTTTGGCTATTCCAAAAATGGAAAACAAAGGGACTATGCGTGGGTAAAGCAGGGGATGATATTCCCGTTCTTGGAATTCATGGACAGATTCCCCGGGCAGTCCCAATTGCACAAATGTAAAGCAAGTGACTTTAACGGTGCATTGGATGAGGCATACTTGGTGGAAAATGGCATTTTGGACGTACAATTGGGAGCTGAGCAAGATATGGAAGGTGAAGGTTCCTGTGTTGACCAGGAATATGCCGATCAAGACCAGGATACACTATCTTGTGCTGGCTGTGGTTTGATGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGTTGTGATCCTCAGCACTATTGCAAGCCTTGTGCAAAGTTAATAAAATCGAAACAATACTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATTTCCAGCAAACATTTCAAGGATCTGGAAAATACGGATTACTATTGCCCCGATTGCAAGGGAAAATTCAACTGTGAATCATCAACATCACAAACATACAAGTCAAAAAATATATCATTGGAGACTGGCCCAAAACCTGCATTACCTGAGAATCTAGGGGTGGTATGCAATGGCATGAAAGGAATCTATATTCCAAATGATCATATGATTATGTGCAAGTGTTGCTTGTGTGGTTCAAGGACGCATACACTTACTGACTGGGAAAGACATGCAGGTTCCAAAGCCAGAAAATGGAGATATAGTGTGAAAGTAGAAAGCACAATGCAACCGCTCAAAGAATGGATCGATGAACACAATTCCGGAGCTGGAACTTCCCTGCAGTTAGATCAGCAACAAATACTCTCCTTTTTGCAAGAGAAATATGAGCCAGTTTATGCAAACTGGACAACAGAAAGATGTGCCATTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATCATCTGTAACAGGTGCCAAATTGCTGTCCACCAAGAATGCTACGGGGCAAAGAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGCCTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGTGGGGCTCTGAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTCACGTGCGCTTGGTTTCAGCCTGAAGTTCTTTTCCAAAATGACAAGGCAATGGAACCAGCCTCTGGAATATTCAAGATTCCTCCTAATTCCTTTTCAAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACATATTTTCATGTAATGTGCGCGTCAAGAAAGGGATATAGCATGGAATTGCATTCGACAGAAAAGAATGGGACTCTAATAACGGAGAAGCTAATATATTGTGCACGTCACAGGGTCCCAAACCCAGAATCAGGACTGGTTGTACATACACCCCAGGAGGTATTCTCACCGACAACTTCACTTCGAAATCACCTAGGGAGCATCAGGGGATCAAGGCTGGTTTCATCAGAGATTATGGAACTTCCCAAAACTGTAAACTCTGAAATTAACGAGATTGAGCCACTGTCTGCAGCGAGATGCCGTGTGTTCATAAGGCCTTCCCGTAAGAAGGATGAAGTGCCAATCATTCACTTGCTTGGGAGGACAAACCTTCATTCTTTAAGTGCAATAACTCAATTGAACAGCAATAAGGATGCTCAAGTATTTTCATCTCTTAAGGAACGTCTTCACCATTTACAGAAAACAGAAAACCAAAAAGTTTGCTTAGGAAAATCAGGTATTCATGGATGGGGCCTCTTTGCTCGTAGAGATCTGGAAGAAGGAGAAATGGTTGTTGAATATCGTGGCGAGCAGTTACGACGTAGTATCACTGACCTAAGGGAAGCACAGTATCGTTCAGAAGGCAAAGATTGTTATTTCTTCAAGATTAGCGAGGAAGTGGTGATTGACGCAACGGATAAGGGCAATATTGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTGTGCCTTTGAGTGATCAGGAGAACAGGATTGTTCTTATTGCCAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATAATTACTCGTTCGATGATGAGCGGGATGAAGAAAAGGTTGTCTGTCGCTGTAAAGCCCCTAACTGTAGCGGATTTATGAACTAG 2952 0.4316 MIIKRSLKTGIQKWKQCKPENCDNSAIQKKRKPENRDKSAVQKKQRVNEVSSAEGGASGSCEVQSNSNSVDSNGTIQDLAPQSEERIIQPRPSRGRAKKLPSRFSDSFVYERFGLDGEDKNTLQDVAANGNERDSPCSSNSAESGDFKYLVKTVKMTVNGGRKLLVKEKSNDAAGPSSNAVGVEGNGKKKDIFKLDDFILGDIVWAKCGKKHPAWPAIVIDPLLQAPKSVLSCCVPGALCVMFFGYSKNGKQRDYAWVKQGMIFPFLEFMDRFPGQSQLHKCKASDFNGALDEAYLVENGILDVQLGAEQDMEGEGSCVDQEYADQDQDTLSCAGCGLMLPCKTMKKIKDSSCDPQHYCKPCAKLIKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKHFKDLENTDYYCPDCKGKFNCESSTSQTYKSKNISLETGPKPALPENLGVVCNGMKGIYIPNDHMIMCKCCLCGSRTHTLTDWERHAGSKARKWRYSVKVESTMQPLKEWIDEHNSGAGTSLQLDQQQILSFLQEKYEPVYANWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRACETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPEVLFQNDKAMEPASGIFKIPPNSFSKTCVICKQSHGSCTSCCKCATYFHVMCASRKGYSMELHSTEKNGTLITEKLIYCARHRVPNPESGLVVHTPQEVFSPTTSLRNHLGSIRGSRLVSSEIMELPKTVNSEINEIEPLSAARCRVFIRPSRKKDEVPIIHLLGRTNLHSLSAITQLNSNKDAQVFSSLKERLHHLQKTENQKVCLGKSGIHGWGLFARRDLEEGEMVVEYRGEQLRRSITDLREAQYRSEGKDCYFFKISEEVVIDATDKGNIARLINHSCMPNCFARIVPLSDQENRIVLIAKTNVSAGEELTYNYSFDDERDEEKVVCRCKAPNCSGFMN* 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1817 983 SUPERFAMILY FYVE/PHD zinc finger 369 428 IPR011011 -
Gso3g1817 983 Gene3D SET domain 813 983 IPR046341 -
Gso3g1817 983 ProSitePatterns Zinc finger PHD-type signature. 556 601 IPR019786 -
Gso3g1817 983 ProSiteProfiles Post-SET domain profile. 967 983 IPR003616 -
Gso3g1817 983 Pfam PHD-finger 371 424 IPR019787 -
Gso3g1817 983 SMART PostSET_3 967 983 IPR003616 -
Gso3g1817 983 SUPERFAMILY FYVE/PHD zinc finger 553 618 IPR011011 -
Gso3g1817 983 ProSiteProfiles Zinc finger PHD-type profile. 553 604 IPR019787 -
Gso3g1817 983 Pfam PHD-finger 568 602 - -
Gso3g1817 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 550 604 IPR013083 -
Gso3g1817 983 ProSiteProfiles SET domain profile. 842 959 IPR001214 GO:0005515
Gso3g1817 983 ProSiteProfiles Zinc finger PHD-type profile. 369 425 IPR019787 -
Gso3g1817 983 ProSiteProfiles PWWP domain profile. 200 269 IPR000313 -
Gso3g1817 983 PANTHER PHD FINGER PROTEINS 1 983 - -
Gso3g1817 983 CDD PHD_TCF19_like 372 422 - -
Gso3g1817 983 Pfam PHD-zinc-finger like domain 609 721 - -
Gso3g1817 983 MobiDBLite consensus disorder prediction 19 100 - -
Gso3g1817 983 ProSiteProfiles Extended PHD (ePHD) domain profile. 607 722 IPR034732 -
Gso3g1817 983 SUPERFAMILY Tudor/PWWP/MBT 197 298 - -
Gso3g1817 983 CDD SET_SETD1-like 831 978 - -
Gso3g1817 983 SUPERFAMILY SET domain 836 980 IPR046341 -
Gso3g1817 983 Pfam PWWP domain 201 294 IPR000313 -
Gso3g1817 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 363 428 IPR013083 -
Gso3g1817 983 MobiDBLite consensus disorder prediction 45 82 - -
Gso3g1817 983 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 27 983 IPR025780 -
Gso3g1817 983 CDD PHD_ATX3_4_5_like 555 601 IPR042011 -
Gso3g1817 983 SMART PHD_3 555 602 IPR001965 -
Gso3g1817 983 SMART PHD_3 666 722 IPR001965 -
Gso3g1817 983 SMART PHD_3 371 423 IPR001965 -
Gso3g1817 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 723 IPR013083 -
Gso3g1817 983 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX3 1 983 - -
Gso3g1817 983 Pfam SET domain 853 958 IPR001214 GO:0005515
Gso3g1817 983 Gene3D - 192 299 - -
Gso3g1817 983 SMART set_7 842 965 IPR001214 GO:0005515
Gso3g1817 983 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1817 Gso-Chr3 43838819 43847120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1817 488 721 C2H2 Transcription Factor Family AT3G14740 27.642 1.32e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso3g1817 zf-HC5HC2H_2 4.6e-29 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1781 19 46592024 46592901 Gso3g1817 3 43838819 43847120 GST