Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1816 ATGACTACTATGGAGCCAGACGTTGAATCCAAGTATGCCCACAACGGCAAGGTCATGGTGGGCACCGCCATTCTCCTCTTCATTCTTATAATAATCATTATTTTCTTCCACACCTTCGTCCGCTTCTGCCGCCGTCGCCGCCGTCGCCCCTTCTCTCGTTCGCTTCCGACCAATTCCTCCGCCGCCGCCTCTCTCGACGACCCCTGCCTCGACCCTTCCGTCATCAAGTCCCTTCCCACTTTTACTTTCTCCGCCGCCACCCACCGCTCTCTCCAGGACTGCGCCGTTTGCCTGTCGGAGTTCGCCGACGGCGACGAGGGCCGCGTGCTCCCGAATTGTAAGCACGCTTTCCACGCCCATTGCATCGACACGTGGTTCGGGTCTCACTCCAAGTGTCCTCTCTGCCGAACCCCGGTCCTACCGGCCACGGGTTCAGCTGACACTGAACCGGGTTCGGTTTCCGAAGCGGGTGAGGGTTGCTCCTCATCGTCTTTGCCTCCGCCGATTGGGTGTCCGAGAAAGCCATTGGATATAAATATAATCATAGAGATTCCAGAGGTGGAAAGAGGGTCTGATTCTGTAACCGGAGATCAAGGGTTCAGATGGTCATTGAAGAGGTTTTGCAACGTTTAA 633 0.5608 MTTMEPDVESKYAHNGKVMVGTAILLFILIIIIIFFHTFVRFCRRRRRRPFSRSLPTNSSAAASLDDPCLDPSVIKSLPTFTFSAATHRSLQDCAVCLSEFADGDEGRVLPNCKHAFHAHCIDTWFGSHSKCPLCRTPVLPATGSADTEPGSVSEAGEGCSSSSLPPPIGCPRKPLDINIIIEIPEVERGSDSVTGDQGFRWSLKRFCNV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1816 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 142 IPR013083 -
Gso3g1816 210 MobiDBLite consensus disorder prediction 144 171 - -
Gso3g1816 210 MobiDBLite consensus disorder prediction 147 161 - -
Gso3g1816 210 CDD RING-H2_EL5_like 93 136 - -
Gso3g1816 210 Pfam Ring finger domain 93 136 IPR001841 -
Gso3g1816 210 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Gso3g1816 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 155 - -
Gso3g1816 210 SMART ring_2 94 135 IPR001841 -
Gso3g1816 210 PANTHER RING-H2 FINGER PROTEIN ATL64 9 155 - -
Gso3g1816 210 SUPERFAMILY RING/U-box 74 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1816 Gso-Chr3 43836573 43837677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1816 12 148 Rapid Response to Elicitors AT3G16720 43.709 1.90e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1816 - - gmx:102665377 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1780 19 46584521 46585774 Gso3g1816 3 43836573 43837677 GST