Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso3g1808 | ATGATTATTATAGCACGCCTTATGTTTCTTCTTGCATTGTTTCTTTTACTCGTAACAAATACAGGCCAAATGGTATTTGCACAAGATGACAATAATGTTAGAGATGCTTGCAGTGTGACAAGGTTCCAAAGCCTTTGTGTTCAGACGCTAGGGCATTTTTCCCGCACTGCAGGAACAAGCCCCAGCAAGTGGGCACGCGCGGGAGTATCCGTGTCAATAGGCGAGGTCAAGAATGTTGAAGCATATCTAGCACAAGTGAAACGTCAAGGACAATTGAAGGGAAGAAACAGTGTTGCCCTTTCAGATTGTGTTGAAACTTTTGGCTATGCCATTGACGAGCTTCACAAATCACTTGGCGTGCTAAGGAGCCTAAGCAAAAGCAAGTTCAGCACCCAAATGGGTGACCTCAACACGTGGATCAGTGCAGCACTCACTGATGAGGTGACTTGCCTCGATGGGTTTGAAGGCAGCAAGGGGACCAATGTTAAATTGCTGCAAAACCGGGTTCAGAATGCGTCTTACATCACAAGTAACGCTCTTGCTCTCATCAACAAACTTGCCACTGAAGGTCTGGGAAGCATCAATGATCCATAG | 594 | 0.4579 | MIIIARLMFLLALFLLLVTNTGQMVFAQDDNNVRDACSVTRFQSLCVQTLGHFSRTAGTSPSKWARAGVSVSIGEVKNVEAYLAQVKRQGQLKGRNSVALSDCVETFGYAIDELHKSLGVLRSLSKSKFSTQMGDLNTWISAALTDEVTCLDGFEGSKGTNVKLLQNRVQNASYITSNALALINKLATEGLGSINDP* | 198 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso3g1808 | 197 | CDD | PMEI-like_3 | 36 | 188 | - | - | |
| Gso3g1808 | 197 | SMART | PMEI_2 | 28 | 182 | IPR006501 | GO:0004857 | |
| Gso3g1808 | 197 | Pfam | Plant invertase/pectin methylesterase inhibitor | 32 | 182 | IPR006501 | GO:0004857 | |
| Gso3g1808 | 197 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 31 | 186 | IPR035513 | - | |
| Gso3g1808 | 197 | PANTHER | PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN | 12 | 181 | - | - | |
| Gso3g1808 | 197 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 12 | 181 | - | - | |
| Gso3g1808 | 197 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 7 | 186 | IPR006501 | GO:0004857 | |
| Gso3g1808 | 197 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 29 | 188 | IPR035513 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso3g1808 | Gso-Chr3 | 43777443 | 43778565 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso3g1808 | 33 | 186 | Carbohydrate Esterase | AT3G14310 | 32.704 | 5.81e-17 | 76.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso3g1808 | - | - | gmx:100791264 | 368.237 |