Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1806 ATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTCTGAAGTATGGACACATAACACACATTGACCTAAAGGTTCCCCCAAGACCACCTGGTTATGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGATACAATAGTCACAGCAATGGCCGAGGTGGACGTGGGGTGTCTAGGCGCTCTGAATATCGTGTTCTAGTCTCTGGATTGCCCTCTTCGGCATCCTGGCAGGATCTTAAGGATCACATGCGTAAGGCAGGGGATGTTTGTTTTTCTCAAGTTTTTCATGATGGAAGGGGTACTACCGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGGGATATGTTCGGGTGAGAGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGGAGCTATAGCCGCAGTCGTAGCCGTAGCCGTAGTTACAGTCGGGACCGGAGCCAAAGCAAATCTCCAAAGGGTAAGTCTTCACAGCGTTCACCTGCTAAATCTCCATCAAGATCTCCCTCTCGTTCAAGATCAAGGTCCCGATCGTTATCAGGATCACGGTCCAGGTCCAGGTCCCCATTGCCTCCGCGTAATAAAAGCCCCAAAAAGCGCAGTGCTAGCAGGAGTCCGAGTAGGAGTAGGAGCAAGAGCAAGAGTTTGTCCCGGTAA 888 0.4831 MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYNSHSNGRGGRGVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRDRSQSKSPKGKSSQRSPAKSPSRSPSRSRSRSRSLSGSRSRSRSPLPPRNKSPKKRSASRSPSRSRSKSKSLSR* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1806 295 MobiDBLite consensus disorder prediction 73 107 - -
Gso3g1806 295 SUPERFAMILY RNA-binding domain, RBD 5 175 IPR035979 GO:0003676
Gso3g1806 295 MobiDBLite consensus disorder prediction 215 229 - -
Gso3g1806 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Gso3g1806 295 MobiDBLite consensus disorder prediction 230 268 - -
Gso3g1806 295 MobiDBLite consensus disorder prediction 186 295 - -
Gso3g1806 295 MobiDBLite consensus disorder prediction 269 284 - -
Gso3g1806 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Gso3g1806 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Gso3g1806 295 Gene3D - 111 188 IPR012677 -
Gso3g1806 295 CDD RRM2_SF2_plant_like 111 186 - -
Gso3g1806 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Gso3g1806 295 MobiDBLite consensus disorder prediction 73 108 - -
Gso3g1806 295 Gene3D - 2 110 IPR012677 -
Gso3g1806 295 SMART rrm1_1 112 185 IPR000504 GO:0003723
Gso3g1806 295 SMART rrm1_1 8 78 IPR000504 GO:0003723
Gso3g1806 295 CDD RRM1_SF2_plant_like 8 78 - -
Gso3g1806 295 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 286 - -
Gso3g1806 295 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1806 Gso-Chr3 43760440 43766217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1806 2 195 Eukaryotic Initiation Factors Gene Family AT4G34110 24.631 4.95e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1771 19 46520192 46526049 Gso3g1806 3 43760440 43766217 GST