Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1787 ATGGTGAAGATGAAGGGGAAAAGCCAAAGCCAAAGGATTGGAAAAAAGAGTAGAAAAATGAAGGGCGCGTTGAGTACCACTACCAACACCACTAGACACTTGCAGCTTCAGCTAGGTCAAGTGTCCCTCATTCCACTCCAACAACCGTCTTCTACTACTGCTACTACTTCTTCCGCAGTTTCTTGCTTCCAGAACCTTCTAGATGCAGAAGCTCCCAATGCGTCTTCCTCTCGCGTGGCGCTCATCGACAACGCTGCCGCCGCCGCCGCCGCCGCCGACGACAGAGACTTTATTCTCAGCCAGGATTTCTTTTGCACTCCGGATTACATAACTCCGGATAACCAGAACGTTTTCAACGGCTTTGATTGCGATAGGGAAAATACGCCTTGTCCCAAATCGCCGGAGAAGCTCAACACTACCAAAAGCAAGAGATGCCGACCTGATGCTATGTCAGTACACCCTCTCAGCCCTACCTTCTGTAGTGACCATCAACCAGTTGTGGAACTTGGAAAGGACTCTGGTACCGAAGAACTGGCTCTTGAGAAAACAATAGCACCTGGGAAACCAAAGGCTCAAAATTATGTGTCACATTCTGCAGTTGCATTGCGTTGCAGGGTTATGCCTCCTCCTTGCTTTAGGAACCCCTATTTAAAAGACGTATCAGACAAGGATTTAGATCCTTTTGGAAACCAAAGATTGAAATGTGCAGGTCTCTTCCCTGCATTTACTGGTGGTGATGGGCTTTCACGCTACCGCGCTGACTTTCATGAAATTGAGCAAATTGGCAGAGGGAACTTTAGTAGTGTTTTCAAAGTATTAAAACGAATAGATGGTTGCTTGTATGCTGTGAAGCACAGCACCAGACCATTACGCCTGGAAACAGAAAGGACAAAAGCTTTGATGGAAGTTCAAGCTTTGGCAGCCCTAGGTTTGCATGAGAATATTGTGGGCTACTATTCTTCATGGTTTGAAAATGAACAACTGTACATTCAGATGGAGCTATGTGATCACAGCTTATCTATAAGAAAATACTCCGCTTTATTTACAGAAGGACAAGTGTTAGATGCCTTATTTCAGGTTGCCAATGCACTGCAATTTATACACGAGAAGGGAATAGCTCATCTAGATGTCAAACCTGATAATATTTATGTGAAAAATGGTGTTTATAAGCTTGGTGATTTTGGATGTGCAACTCTTCTTGATACTAGCCTGCCAATTGAGGAGGGCGACGCACGTTATATGCCCCAGGAAATCCTTAATGAGAATTATGATCACCTTGACAAGGTTGATATCTTTTCCTTGGGAGCTTCTATTTATGAACTAATTCGTAGGTTGCCTTTGCCAGAATCAGGATGTCAATTTTTAAATCTTAAAGAGGGCAAGTTTCCCCTTCTGCCTGGTCATTCGTTGCAACTTCAAAACTTGCTCAAGGTCATGATGGACCCTGATCCGGTGAAGCGGCCTTCTGCTAAAGAATTGATAGAGAATCCAATTTTTTGTAGGATTCAAAGAACAGCAAGTTGA 1524 0.4409 MVKMKGKSQSQRIGKKSRKMKGALSTTTNTTRHLQLQLGQVSLIPLQQPSSTTATTSSAVSCFQNLLDAEAPNASSSRVALIDNAAAAAAAADDRDFILSQDFFCTPDYITPDNQNVFNGFDCDRENTPCPKSPEKLNTTKSKRCRPDAMSVHPLSPTFCSDHQPVVELGKDSGTEELALEKTIAPGKPKAQNYVSHSAVALRCRVMPPPCFRNPYLKDVSDKDLDPFGNQRLKCAGLFPAFTGGDGLSRYRADFHEIEQIGRGNFSSVFKVLKRIDGCLYAVKHSTRPLRLETERTKALMEVQALAALGLHENIVGYYSSWFENEQLYIQMELCDHSLSIRKYSALFTEGQVLDALFQVANALQFIHEKGIAHLDVKPDNIYVKNGVYKLGDFGCATLLDTSLPIEEGDARYMPQEILNENYDHLDKVDIFSLGASIYELIRRLPLPESGCQFLNLKEGKFPLLPGHSLQLQNLLKVMMDPDPVKRPSAKELIENPIFCRIQRTAS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1787 507 Gene3D Transferase(Phosphotransferase) domain 1 334 503 - -
Gso3g1787 507 PANTHER BNAA08G27310D PROTEIN 77 413 - -
Gso3g1787 507 PANTHER BNAA08G27310D PROTEIN 426 503 - -
Gso3g1787 507 SUPERFAMILY Protein kinase-like (PK-like) 249 503 IPR011009 -
Gso3g1787 507 Gene3D Phosphorylase Kinase; domain 1 246 333 - -
Gso3g1787 507 SMART serkin_6 255 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1787 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 372 384 IPR008271 GO:0004672|GO:0006468
Gso3g1787 507 Pfam Protein kinase domain 255 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1787 507 MobiDBLite consensus disorder prediction 1 31 - -
Gso3g1787 507 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 77 413 - -
Gso3g1787 507 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 426 503 - -
Gso3g1787 507 ProSitePatterns Protein kinases ATP-binding region signature. 261 284 IPR017441 GO:0005524
Gso3g1787 507 ProSiteProfiles Protein kinase domain profile. 255 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1787 Gso-Chr3 43645347 43648903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1787 12 503 Core Cell Cycle Gene Families AT1G02970 60.808 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Gso3g1787 Pkinase 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1787 K06632 - gmx:547742 991.104