Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1785 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGGGAAGAAGTTCATCAAGAAAGTCAGCACCAACATCAACAAAGCCAACTTCATGACTCAAGTTCAGGACCATCCGGTGCTTGCAATAGCAATGCCTCCACTAATCAACAACAAACCAAGAAGAAACGAAACCTTCCTGGAACCCCAGATCCTAATGCTGAAGTTGTTGTCTTATCACCAACCACACTAATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGATTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCGTGGAAACTGAGACAAAGAACAAGCGCTGAGGTGAAGAAAAGGGTCTATGTGTGCCCTGAGCCATCATGCGTGCACCATAACCCAGCTCGTGCACTAGGGGACCTCACTGGCATCAAAAAGCATTATAGCCGCAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCCAAAAGATACGCAGTCCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACTAGGGAATACAAATGTGATTGTGGTACCATATTTTCCAGGAGAGATAGTTTCATCACCCACAGAGCTTTCTGTGACGCATTAACCGAAGAAAACAACCGAGTGAACAACCAGGGATTAACAAGTGGCATGCCACCAAACTTGCAAAGTAAAATACCTGATCTCATGTCCACCATGCCCCTAACAACTAGTCCCAACACAACAACCAAATTCGGGGACTATGACCCTAAGAACCCTCTAAAATCACTAGCCCAAGAACTTGTCCCAATACCCTTCAAGCCCACAAGCATGGGAGGGGGCATGTTCTCCACCAATGCAGGTGCACGTTTTGGTGGCCCAAAAACCATGTCTCCCTCTTCTTCCAGCCTCCAACTAGGTTCCAGCACCTCATCAAGCTTCAATTACTTGCAAGATAGCAAAAACGGAGGACTAATCGCAGCCTCGGCTCAAATGTCCGCAACAGCTTTGTTACAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAATAGTATTAACTCCCCAATGATGCAAAAAGGCTTTGTTGGTGGCACTACCACTGGTCCTGATCATGTTTCTTTCACTACTAGGCCACCATATTATGGTGCTATGCTTCAGCACAACAACTCCTATGACCACTTCTCTCCACAGCATGATCTTTCCAACATGGCTGGGGTGAGTGGTGGAGGAGCATTCATCAATCAATTGTTTCATAAAGGACAAGAAATTTCACAAGTTTTTGACACTAACACTACAATGAATGGTGTGGGAATGTTCAGCCAAATGCCAATGGGGAGTGAACACAATCACAACCAAGGGTTGATGAAGAATGTGGAACAAGAGGTTAGTAATGGTTCCAGTTTGATACATGTAAGAGATGTGAGTGATGGTAACCACACAATGCAGCCATCAAGGTTTGGAGGGAGTGACATGACAACTGTTCATGACTTCTTGGGGATTGGTGGTTCAACTTCAAGAGTTATGAATCATTTTCATCACCATCTTCCACACGAGGATTCGGCTATTGAGGAACCCATGTGGGATGTTTGA 1599 0.4522 MSNISGDEGSFSSGNNGEEVHQESQHQHQQSQLHDSSSGPSGACNSNASTNQQQTKKKRNLPGTPDPNAEVVVLSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSAEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNNQGLTSGMPPNLQSKIPDLMSTMPLTTSPNTTTKFGDYDPKNPLKSLAQELVPIPFKPTSMGGGMFSTNAGARFGGPKTMSPSSSSLQLGSSTSSSFNYLQDSKNGGLIAASAQMSATALLQKAAQMGATASNSINSPMMQKGFVGGTTTGPDHVSFTTRPPYYGAMLQHNNSYDHFSPQHDLSNMAGVSGGGAFINQLFHKGQEISQVFDTNTTMNGVGMFSQMPMGSEHNHNQGLMKNVEQEVSNGSSLIHVRDVSDGNHTMQPSRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHLPHEDSAIEEPMWDV* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1785 532 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Gso3g1785 532 Gene3D Classic Zinc Finger 63 130 - -
Gso3g1785 532 MobiDBLite consensus disorder prediction 1 69 - -
Gso3g1785 532 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Gso3g1785 532 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Gso3g1785 532 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Gso3g1785 532 SMART c2h2final6 161 181 IPR013087 -
Gso3g1785 532 SMART c2h2final6 85 107 IPR013087 -
Gso3g1785 532 SMART c2h2final6 126 156 IPR013087 -
Gso3g1785 532 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 517 - -
Gso3g1785 532 Gene3D Classic Zinc Finger 140 219 - -
Gso3g1785 532 MobiDBLite consensus disorder prediction 1 61 - -
Gso3g1785 532 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1785 Gso-Chr3 43624126 43627302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1785 35 375 IDZ Gene Family AT3G50700 53.495 9.37e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1785 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1785 - - gmx:100779705 1046.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1753 19 46382454 46385481 Gso3g1785 3 43624126 43627302 GST