Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1784 ATGGATGCGTGGAACGAAGATTTTTCGGAGCTGGAGATTGGGAGCTCCACTGAATCGTTCCAGAAGTTTTTGGTTTCGCAGAGAGAGCTTTTCCACAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACGCAATGCAAACTCACCGGCGTCAATCCTCTCTCTCAGGAAATGGCAGCTGGTGCTTTGTCAATAAAAATTGGAAAAAGACCGAGGGATTTATTGAATCCAAAGGCTGTAAATTACATGCAATCTGTTTTTTCCATTAAAGATGCTATTAGCAAGAAGGAATTGCGCGAGATCAGTGCTTTACTCGGTGTTACAGTGACACAGGTGCGTGACTTTTTCAATGCTCAACGTTCAAGAGTGAGGAGATCCGTGCAGTTGTCAAGGGAGAGGGCACTGAGTTCTAATTCTTGTGAAGAACCTCATGATGATCAAATAAACTCTGATCCTATGAGACCAATAAATCCAACTCCCTTAAACTCTGCTGGCCTGTCCAATACTGAAGAAGCATCTTGTTCAACACAGGAAGTGACTTTGTCTGACCTAGATGACTCAGATAAACAATTTGTTGATAGCATTTTTAGTTTAATGCAAAAAGAGGAGACATTTTCTGGGCAGGAGAAATTGATGGAGTGGATATTGACGATACAGAATTTTTCAGTATTGTTGTGGTTTTTGAGCAGAGGGGGTGGAATGAATTTAGCAACTTGGTTGAGCAAGGCAGCTGTTGAAGAGCAAACAAGTGTCCTTCTTCTTGTTTTGAAGGTTCTTTGTCATTTGCCTTTACATAAAGCTGTTCCCATGCACATATCAGCTATATTGCAGAGTGTAAATAAACTACGGTTCTACAGGACATCAGACATATCAAACAGGGCAAGGGTTTTGTTGTCAAAGTGGAGCAAACTATTTGCAAGGAACCATGTAATAAAGAAGCCCAATGGTGTTAAGACTTCTAGTGATGGTCATAAAGAGATGATGCTTTCTCGGAGTATTGGTCAACTTATGGGCTCTGAATCATGGCATTCAAATATTGATGTTCCTGAAGACATTCTTGCTCTCTCAAGTGAATGTTCGAATAATTTCAGGAAAATAGGATCTCCACAAGGTGTGAAATTGTTGCCTCCCAGCTTGGATGATTCTAATAAAAAGTCCACTCTTGGTGTATCTTCATCTCAATCTAGAGAACGCAGAAAAGTGCAATTGGTGGAACAGCCGGGCCAAAAGTCAGTGAGCAGAAGCTCACAAGTGACGAGAGCAGGGCCTGTAAGTCAAGGCCGTCCCATGTCTGCTGATGATATTCAGAAAGCAAAAATGCGTGCTTTATTTATGCAGAGTAAGTATGGGAAATCTGGTTCAAAAGAGAGTAGCGAAACAAAAATTGATAGCCCATATAAACAACCTCAGACAAACCCCGCCAGTATTGCAGCTTGCTCTTCTAAAGTTCCTACTCCACCCAAAATTGAAGAAAACGAGAAACCTTTGTTACTTGCCTCTAAAGCCACTAATAAGCTGGAAGCTTCTTATTCAAAACCAAAAATGGATGTGAAGGAACCTCTCTGGGAGAAGTGCAAGAGGGTTCAGATCCCATGGAAAACACCAGCAGAAGTGGAACTTAAAGATACCTGGAGAGTTGGTGGCGGTGAAAATAGCAAAGAGGTTGAGGTCCAGAGAAACAGAAACCGCAGGGATAAGGAAATTATATACAAAACTGTCCAAGAGATGCCACCTAACCCCAAGGAGCCTTGGGACCTTGAAATGGACTATGATGATACTTTGACGTTGGAAATCCCTATTGAACAGCTACCAGATGGTGATGCAGATATAGCAATTTCCCCCAATCATGTTGCAACTCATAGTGTTCAAGGGGTGGCCTCCACTTCTTCAACCAGTGTGGCTACTGCTGAACCTGATTTAGAATTGCTTGCTGTGCTGTTAAAAAATCCAGAGTTGGTGTTTGCCTTAACTTCTGGACAAGGTGGTAGCATACCGAGCGAAGAAACCGTGAAGCTGCTTGACATGATCAAGAGTGGAGGTGTGAACTTGGGTTTAAGTGAAAATACAAATGGAAGTTATGGCACGAGTGTAAAGGCCCCGGAGAAGGTGGAAGTTTCTCTTCCATCTCCAACCCCCTTAAGCGATCCAAGAACGAGTGGATGGAGCTCAGAAGCATCAAAAAATCCCTTTTCAAGGCAAAGTCTAGCACCCGATAGAATTACACAGAAACATACTGCAGTGGCAACTACCAACTTATTATCTCAGATTCCTATAACTGTCACTACAGTAAGGCAACAACCAACAGTTGTGGTTCCATCTTCGAGGCATCTTACAAGCATATCAGTTTCTCCATATTCACTGCCTCAAGCAACTAATGTTATTCCTGAAAAGCCACCGCCCCTGGGGCATGTACAAACATCCTCAGATGTAGGTTTAACCATGAAGAAGAACTTAATCACTGCAAATGCATCTTCAGTTAACTTTACTGGCACACATTCAACTCTAGCAATGCGGGGTGATGGCACCAATTATGTAAAACCTGTACCTAATTTGAGTGTGCAACATGAGGGTTTGTCTAATTCATTCCCACAACCCTTCATGCCACCCTCACCAACACCATCCCATTCAGCCTCACAGCAACAAAGACATCAACATTTGGCCCAGGAAGTCCATTACACTGAACCTCCATATCGTAACCCTGGCCGTTCCTACCCGCCACAAATCGAAAAATCAGATCACGGGTCTGATAATATGTGGAGAGTTAGGCAGGATCATGTGTCATCTAGTTATCTTTCTCAACGAAACCATAACAACAACTATAACACAATTGTTGGGGGATCCAGACAATCTGGTTTTTATGATAGAAATAATCATGCAAGGGGAGAATTTGAATCATGGAGTCCGGAAAATAGTCCAACTAGAAATCCTAGGTATGCACCAGGTAGAAATTACCCAGAGTCCAGAATGAATCATGGTAGAAATCATAGACCTGAATGGTCAAGGCAGAGGGGTTCTTCTGGACACTGGGACCCTGGCAGACAGGGAAACAGAAAGTGGCATGATCAGAGACGATGA 3075 0.4286 MDAWNEDFSELEIGSSTESFQKFLVSQRELFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSVFSIKDAISKKELREISALLGVTVTQVRDFFNAQRSRVRRSVQLSRERALSSNSCEEPHDDQINSDPMRPINPTPLNSAGLSNTEEASCSTQEVTLSDLDDSDKQFVDSIFSLMQKEETFSGQEKLMEWILTIQNFSVLLWFLSRGGGMNLATWLSKAAVEEQTSVLLLVLKVLCHLPLHKAVPMHISAILQSVNKLRFYRTSDISNRARVLLSKWSKLFARNHVIKKPNGVKTSSDGHKEMMLSRSIGQLMGSESWHSNIDVPEDILALSSECSNNFRKIGSPQGVKLLPPSLDDSNKKSTLGVSSSQSRERRKVQLVEQPGQKSVSRSSQVTRAGPVSQGRPMSADDIQKAKMRALFMQSKYGKSGSKESSETKIDSPYKQPQTNPASIAACSSKVPTPPKIEENEKPLLLASKATNKLEASYSKPKMDVKEPLWEKCKRVQIPWKTPAEVELKDTWRVGGGENSKEVEVQRNRNRRDKEIIYKTVQEMPPNPKEPWDLEMDYDDTLTLEIPIEQLPDGDADIAISPNHVATHSVQGVASTSSTSVATAEPDLELLAVLLKNPELVFALTSGQGGSIPSEETVKLLDMIKSGGVNLGLSENTNGSYGTSVKAPEKVEVSLPSPTPLSDPRTSGWSSEASKNPFSRQSLAPDRITQKHTAVATTNLLSQIPITVTTVRQQPTVVVPSSRHLTSISVSPYSLPQATNVIPEKPPPLGHVQTSSDVGLTMKKNLITANASSVNFTGTHSTLAMRGDGTNYVKPVPNLSVQHEGLSNSFPQPFMPPSPTPSHSASQQQRHQHLAQEVHYTEPPYRNPGRSYPPQIEKSDHGSDNMWRVRQDHVSSSYLSQRNHNNNYNTIVGGSRQSGFYDRNNHARGEFESWSPENSPTRNPRYAPGRNYPESRMNHGRNHRPEWSRQRGSSGHWDPGRQGNRKWHDQRR* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1784 1024 MobiDBLite consensus disorder prediction 927 954 - -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 447 488 - -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 711 732 - -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 380 397 - -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 134 169 - -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 988 1003 - -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 687 732 - -
Gso3g1784 1024 CDD homeodomain 69 126 IPR001356 GO:0003677
Gso3g1784 1024 Gene3D - 66 128 - -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 963 977 - -
Gso3g1784 1024 PANTHER HOMEOBOX PROTEIN LUMINIDEPENDENS 1 1024 - -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 152 169 - -
Gso3g1784 1024 SUPERFAMILY Homeodomain-like 68 132 IPR009057 -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 854 914 - -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 927 1024 - -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 406 424 - -
Gso3g1784 1024 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Gso3g1784 1024 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 1024 - -
Gso3g1784 1024 MobiDBLite consensus disorder prediction 370 432 - -
Gso3g1784 1024 SMART HOX_1 68 130 IPR001356 GO:0003677
Gso3g1784 1024 MobiDBLite consensus disorder prediction 463 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1784 Gso-Chr3 43609913 43618298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1784 521 748 Homeobox Transcription Factor Family AT4G02560 48.684 8.91e-48 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso3g1784 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1784 - - gmx:100780237 1975.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1752 19 46370782 46379176 Gso3g1784 3 43609913 43618298 GST