Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1770 ATGGAGCCTGCAACCGAGAAGAGAGAGGATTTTGGGAAGTTGCAGTACGGATGCGAGCACTATAAGAGACGATGCAAAATTCGAGCACCATGCTGCAATCAGATTTTTCCATGTCGTCACTGCCACAACGACGCCGCGAACTCATCTAGCAACCCCGCAGATCGTCATGAACTTGTTAGACGCGATGTTAAGCAAGTTATATGCTCTGTCTGTGATACTGAACAGGAGGTTGCCAAGGTGTGTTCTAGCTGTGGCGTCAATATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACGGATAAAGGACAATTCCATTGTGATGAATGCGGCATTTGCAGGGTTGGTGGTCGTGATAAGTTCTTTCACTGTAAGAAATGTTGTGCTTGCTATTCAGTGAGTGTGCAAAACAATCACTCATGTGTAGAGAACTCAATGAAGAGTTTCTGCCCTATCTGTTTGGAGTACCAATTTGATTCAATAAAAGGCAGCACCATTTTGAAGTGTGGACACACAATGCATATGGAGTGCTATCGAGAGATGGCAACTCAAAATCAGTATCGCTGTCCTATATGCTTGAAGACAATAGTCAATGATATGAACTGGGAATATTTAGATCGAGAGATTGAAGGCGTTCATATGCCTGAGGAGTACAAGTTTGAGGTTTCAATTCTATGCAATGATTGTAACTCTACCAGCACAGTATCTTTTCACATATTTGGTCACAAGTGTTTACAGTGCGGTTCGTATAACACCCGTAGGATTTCGAAACCCAAACAAGAAGGTTTGGGTGTTAGTGGAACCTAA 816 0.424 MEPATEKREDFGKLQYGCEHYKRRCKIRAPCCNQIFPCRHCHNDAANSSSNPADRHELVRRDVKQVICSVCDTEQEVAKVCSSCGVNMGEYYCEICKFYDDDTDKGQFHCDECGICRVGGRDKFFHCKKCCACYSVSVQNNHSCVENSMKSFCPICLEYQFDSIKGSTILKCGHTMHMECYREMATQNQYRCPICLKTIVNDMNWEYLDREIEGVHMPEEYKFEVSILCNDCNSTSTVSFHIFGHKCLQCGSYNTRRISKPKQEGLGVSGT* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1770 271 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Gso3g1770 271 Gene3D - 223 263 - -
Gso3g1770 271 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Gso3g1770 271 SUPERFAMILY CHY zinc finger-like 14 87 IPR037274 GO:0008270
Gso3g1770 271 Pfam Ring finger domain 153 195 IPR001841 -
Gso3g1770 271 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Gso3g1770 271 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Gso3g1770 271 SUPERFAMILY RING/U-box 152 199 - -
Gso3g1770 271 Pfam Zinc-ribbon 203 256 IPR039512 -
Gso3g1770 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 205 IPR013083 -
Gso3g1770 271 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 9 258 - -
Gso3g1770 271 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 9 258 IPR031109 GO:0008270|GO:0016567
Gso3g1770 271 SMART ring_2 153 195 IPR001841 -
Gso3g1770 271 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1770 Gso-Chr3 43501253 43504720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1770 10 258 C2H2 Transcription Factor Family AT3G18290 42.248 7.78e-53 182