Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1769 ATGAGTGGTGAAGCGCGATCCTGTGACTACTGTGGCCACTCCACAGCACTTCTTTACTGCAGAGCCGATTCAGCAAAACTCTGTTTCTCGTGCGATCGCGAGGTTCACTCCACCAACCAGCTCTTCTCGAAACACACGCGCACGCTGCTCTGCGACGCATGCGATCATTCCCCTGCCACCATACTCTGTTCCACCGACACCTCTGTTCTGTGCCAGAACTGCGACTGGGAGAAGCACAACCCTGCGCTCTCCGATTCCCTTCACGAACGAAGGCCCCTCGAAGGCTTCACTGGGTGCCCTTCAGTCTCCGAACTCTTATCCATCGTGGGGTTTTCGGATTTAAGCAAAAAATCTCTTCTTTCTTCGCCTCAGGGAAGTGGCGCTGATGGGATCTTCGGTGGAGAAATTGAAGGGCTTTCGGATTTGTTTGTGTGGGATTCTCCTTCTTTCGTTACGCTTGATGATTTGATTTCTTCTTCTCCTTCTTCTCATAGCTTTCAGGCCATGGAGGTTCCTCCTCTGCCCAAGAATCGGAAGGCTGCTTGTGGGCAACACAAAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAAGTCTGAGCCATTGGACCTTGAACCATATGTGTCATCGGGGAACTTGTCCTCGGGTTTTGAACGTGAACCAGAGGCTGATATCTTTCCTTCTCATGAGTGGCATAGAGAAAGCAGCGAGCCTATGTATCAGGTTGTTCCTCCTGACCCATTAATGAGAACTTATACAGAAGAAATTCCATTTAAACATTCTACTTCTGCTGTTGGGGAAACTCAAACCTACGGTGACAATGGAGGAAAACCATCCATTTCTCTTAAATCTGAAACCCTATCAACTACTCCCAAAGCTGCAGCATGTGAGTTAACAAGCCAAGAAAGAGATTCTGCATTATTACGGTACAAGCAGAAGAAGAAAACTAGGAGATTTGACAAACACATAAGGTATGAATCACGAAAAGTTCGGGCAGAAAGCAGGGTAAGAGTCAAGGGTCGATTTGCCAAGATGGAACATGAACATTGA 1050 0.4771 MSGEARSCDYCGHSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDHSPATILCSTDTSVLCQNCDWEKHNPALSDSLHERRPLEGFTGCPSVSELLSIVGFSDLSKKSLLSSPQGSGADGIFGGEIEGLSDLFVWDSPSFVTLDDLISSSPSSHSFQAMEVPPLPKNRKAACGQHKEEILSQLRELAKSEPLDLEPYVSSGNLSSGFEREPEADIFPSHEWHRESSEPMYQVVPPDPLMRTYTEEIPFKHSTSAVGETQTYGDNGGKPSISLKSETLSTTPKAAACELTSQERDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAKMEHEH* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1769 349 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 4 347 - -
Gso3g1769 349 CDD Bbox1_BBX-like 8 50 - -
Gso3g1769 349 SMART bboxneu5 51 93 IPR000315 GO:0008270
Gso3g1769 349 SMART bboxneu5 3 50 IPR000315 GO:0008270
Gso3g1769 349 Pfam CCT motif 303 345 IPR010402 GO:0005515
Gso3g1769 349 ProSiteProfiles Zinc finger B-box type profile. 46 93 IPR000315 GO:0008270
Gso3g1769 349 ProSiteProfiles Zinc finger B-box type profile. 3 50 IPR000315 GO:0008270
Gso3g1769 349 Pfam B-box zinc finger 50 93 IPR000315 GO:0008270
Gso3g1769 349 Pfam B-box zinc finger 5 48 IPR000315 GO:0008270
Gso3g1769 349 ProSiteProfiles CCT domain profile. 303 345 IPR010402 GO:0005515
Gso3g1769 349 CDD Bbox1_BBX-like 50 93 - -
Gso3g1769 349 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1769 Gso-Chr3 43492919 43496677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1769 6 318 C2C2-CO-like Transcription Factor Family AT2G47890 41.768 8.56e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso3g1769 zf-B_box 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1769 - - gmx:100817838 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1736 19 46250044 46253700 Gso3g1769 3 43492919 43496677 GST
Gso3g1769 3 43492919 43496677 Gso2g1269 2 15719366 15722347 PCT
Gso3g1769 3 43492919 43496677 Gso10g0186 10 1942905 1945795 PCT
Gso2g1269 2 15719366 15722347 Gso3g1769 3 43492919 43496677 PCT
Gso10g0186 10 1942905 1945795 Gso3g1769 3 43492919 43496677 PCT