Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1758 ATGGCGGAAGGGAAGGAAGAGAGTAAATCTAGCGAGGAAAGTGTGAAGCTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAACCCGAACTGCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAGGTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCAATGCGTGTCACAATAAAAGGACGTTACCCGGGGCATCTAGTCCATTACAAGTGAAGTATGCAGATGGGGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGCTCTCAGCAAACGAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTACTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGGCTCCTGTAGGTTATGGGCTGATGCCGTACCGCATGCCACCGATGCAGAGTCAACACGGTTACCATAATATGATGCCTCACATGAATCAAGGAAATGCATTACGGCCTGATCTTGGCCCCAATATGAACCCTAGAAACTATCATGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCTATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATACTTCTCCTGGTTCAGTTTCACCTGCCAGTGGAAATAACAACCATGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGCTGAAGGACCACCTGGTGCCAACTTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATACCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1296 0.4421 MAEGKEESKSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRASRGCCFVICPSREEADKAVNACHNKRTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALTALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHPSLFGALPMSYVPPYNGYGYQAPVGYGLMPYRMPPMQSQHGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGLQHPMAYPTGMISPRPMNTSPGSVSPASGNNNHAASSGASKNSGGQAEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDTPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQGKPY* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1758 431 MobiDBLite consensus disorder prediction 305 343 - -
Gso3g1758 431 Gene3D - 313 423 IPR012677 -
Gso3g1758 431 PANTHER RNA BINDING PROTEIN 7 418 - -
Gso3g1758 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Gso3g1758 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Gso3g1758 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Gso3g1758 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Gso3g1758 431 MobiDBLite consensus disorder prediction 306 337 - -
Gso3g1758 431 Gene3D - 101 192 IPR012677 -
Gso3g1758 431 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 418 - -
Gso3g1758 431 CDD RRM1_2_CELF1-6_like 16 92 - -
Gso3g1758 431 MobiDBLite consensus disorder prediction 193 208 - -
Gso3g1758 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Gso3g1758 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Gso3g1758 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Gso3g1758 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Gso3g1758 431 SMART rrm1_1 347 420 IPR000504 GO:0003723
Gso3g1758 431 SMART rrm1_1 104 179 IPR000504 GO:0003723
Gso3g1758 431 SMART rrm1_1 16 92 IPR000504 GO:0003723
Gso3g1758 431 SUPERFAMILY RNA-binding domain, RBD 103 426 IPR035979 GO:0003676
Gso3g1758 431 CDD RRM3_CELF1-6 348 420 - -
Gso3g1758 431 MobiDBLite consensus disorder prediction 188 209 - -
Gso3g1758 431 CDD RRM1_2_CELF1-6_like 104 179 - -
Gso3g1758 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Gso3g1758 431 Gene3D - 2 100 IPR012677 -
Gso3g1758 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Gso3g1758 431 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1758 Gso-Chr3 43385976 43390892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1758 345 421 Eukaryotic Initiation Factors Gene Family AT2G23350 36.364 2.98e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1758 K13207 - gmx:100813239 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1725 19 46136461 46141172 Gso3g1758 3 43385976 43390892 GST
Gso3g1758 3 43385976 43390892 Gso2g1260 2 15628980 15633349 PCT
Gso3g1758 3 43385976 43390892 Gso10g0193 10 2019405 2023404 PCT
Gso2g1260 2 15628980 15633349 Gso3g1758 3 43385976 43390892 PCT
Gso10g0193 10 2019405 2023404 Gso3g1758 3 43385976 43390892 PCT