Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1743 ATGTCGATATTATCAAGCATGGACATGCCTACCATTGATGTGGACCTTGGGCCTGAGAAGCTTGAAGATGAGAAACAGGGAGGTCCCTTGTTGCATTGTGATCTTTGTGACACAGAAGTAGTTCACAAGTTGGCTCAAATGTTCCTTCCAGGTCTAGCCAGTGCTTGTGTTGATAACACATCAGGAGATCTCTTCAAGACTCCGGGTTCAGTGGCTGTTGATTTGAGGAAGGAAATGATAGAGTATGTTACCCAAAGAAGTGAATCATTTGTTGCTGAGTCTGTTATCTTGGAAGGTAGTCCAGATGGTGAAGTATCGGACCATCCTTTTGATATCATTTCTAATTTGGTTGATGACTTTGTGAGTTCAAAGAGGAATCTGTTTAGCCGAGTTTCAGGATGGCTGCTGAGTGAAAAGAGGGAGGACAAAATAGATGATTTTGTTCAAGAGATGGAAATGAATGGGTTTTGGACACTTGACAGGAGAGAAATAATTGCAGAAACTTTGCTCAAGAATGTTGACTTTGAAAACTCATATCATTGCAACATGAGTTTTAATTCTGCGGAAGAACTTGCCAATCATGTTGATAACTGCAACTTTAGAACTATGATCTGCGAAAATGAGGGATGCAATTCCAGATTTTGCGCAGCTCATTTGAAGAATCACGACTCAACTTGTGCTTTCAAGATAATTGCATGTGAACAGAAGTGTTCTGATAGCATTATGAGACGTGAGATGGACAGGCATTGTATAACTGTTTGTCCAATGAAGCTTGTAAAGTGTCCTTTTTATGTTGTGGGTTGTAGGTCAGCTGTTGCACAATGTATGATTGAAAAACATTGTTTAGATGACGTTAATTCTCACTTGTGGCACTTGCTTAAAGGCATCTACAAGAAAGCATATGGGGATGATCTTAAACGACGAGTGGAGCAAATTGTACAGGCATCATCAAGCAGCCGTTTAGCAGAGGCTCGGGATGTTAGATCTTTAAACTTCATTGTCAAGGATATTGAAGCTAAGCTAGGACCTTTCAAAGTGAGTGCTGTGGAGAAAAATAATGGAGAGACTGTTACCAAGAATGGCCAAGGGGAAGGTGGTGAGACTGATATGAATGGCAGAGAAAAGAGCATGAAGGCTTCAGATATGGTCAATTCACCAGATAAAGCTGAATTGAGTGGCATGGTAAATATGAATAATGCAGAGAATACTACCAAGAATGAAGATAGGGAATCTGTTCCTCTTGAAAATAAAGGCTTTGAAGAGATTGCACAAACTTCAAATATGACAAATTTATCTGATAAAACTGAAGTTGGCCTCCCAAATGATGAGATCAAAGATGATGCAGCTAGTGAATTAAAAATCAAGGGCAACGAAGAGAGCACTCAAACACAGAAGGAAAAATTATCAAATGAAGAAGTTAGTGCCACAGATAAGGGCAACGAAGAGAGCACTCAAATACACAAGGAAAAATTATCAAATGAAAAAGTTAGTGCCACAAATGAGGGTAGTGCAGAGAATAGCATCAAAAGCAACTATAATGAAGACAATAAATTTGAAGTTAAGGACAACGAACAAAGCATACAGAATTCAAAAATGAAAACCGAGGGTGGTTCAGAGAATAATGTCAAGAACAAAGATGTTGAAGATGGTGACTTAAAAAAGAGCATACAAACTTCAGACGTATAA 1686 0.3891 MSILSSMDMPTIDVDLGPEKLEDEKQGGPLLHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKTPGSVAVDLRKEMIEYVTQRSESFVAESVILEGSPDGEVSDHPFDIISNLVDDFVSSKRNLFSRVSGWLLSEKREDKIDDFVQEMEMNGFWTLDRREIIAETLLKNVDFENSYHCNMSFNSAEELANHVDNCNFRTMICENEGCNSRFCAAHLKNHDSTCAFKIIACEQKCSDSIMRREMDRHCITVCPMKLVKCPFYVVGCRSAVAQCMIEKHCLDDVNSHLWHLLKGIYKKAYGDDLKRRVEQIVQASSSSRLAEARDVRSLNFIVKDIEAKLGPFKVSAVEKNNGETVTKNGQGEGGETDMNGREKSMKASDMVNSPDKAELSGMVNMNNAENTTKNEDRESVPLENKGFEEIAQTSNMTNLSDKTEVGLPNDEIKDDAASELKIKGNEESTQTQKEKLSNEEVSATDKGNEESTQIHKEKLSNEKVSATNEGSAENSIKSNYNEDNKFEVKDNEQSIQNSKMKTEGGSENNVKNKDVEDGDLKKSIQTSDV* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1743 561 ProSiteProfiles Zinc finger TRAF-type profile. 222 269 IPR001293 GO:0008270
Gso3g1743 561 MobiDBLite consensus disorder prediction 352 392 - -
Gso3g1743 561 Pfam TRAF-type zinc finger 222 280 IPR001293 GO:0008270
Gso3g1743 561 MobiDBLite consensus disorder prediction 496 511 - -
Gso3g1743 561 MobiDBLite consensus disorder prediction 512 528 - -
Gso3g1743 561 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 533 IPR043211 -
Gso3g1743 561 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 533 - -
Gso3g1743 561 MobiDBLite consensus disorder prediction 453 495 - -
Gso3g1743 561 MobiDBLite consensus disorder prediction 453 561 - -
Gso3g1743 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 286 IPR013083 -
Gso3g1743 561 MobiDBLite consensus disorder prediction 538 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1743 Gso-Chr3 43253464 43258890 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1743 - - gmx:100819268 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1743 3 43253464 43258890 Gso3g1743 3 43253464 43258890 ECH
Gso19g1713 19 46016900 46021165 Gso3g1743 3 43253464 43258890 GST
Gso3g1743 3 43253464 43258890 Gso2g1434 2 27539035 27542089 PCT
Gso2g1434 2 27539035 27542089 Gso3g1743 3 43253464 43258890 PCT