Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1742 ATGGCTTCAAGATTCTGGACTCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGGTGAGGAAGATGAACACTCGGCGGGTGAACAAGCTCCGAATCAAGACGTGACAAGCAAGTACTTTGTGGACAATGCAAGTGACAGTGATGATTCCGATGGCCAAAAGCGCGTTGTGAGGTCGGCGAAAGATAAGCGATTCGAGGAGATGGTATCCACTGTTGACCAGATGAAGAATGCCATCAAGATCAATGACTGGGTGAGTTTGCAAGAGAGCTTTGACAAGATTAACAAACAGCTTGAGAAGGTCATGCGTGTCACCGAGTCTGAGAAGGTTCCGAATCTGTACATCAAGGCGCTTGTGATGCTGGACGATTTCTTGGTTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAGGCCTTGAACTCCATGAAGCAGAAGTTGAAGAAGAATAATAAGCAGTATGAGGAGTTGATTACCAAATGCAGGGAGAATCCTGAGAGTGAGGAGGAAAAGGAAGAGGAGGAGAGCGAGGACGAGTATGAGAGTGATGATATTGAGCCGGAGCAGCTTCCGGAAGCAAAATCTGATTCTGAAGCCTCTCAGTATGACAATGAAAAGCAAGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACCGGCTTTTGGATAAACAGTTTATGAAAGACCCTAGTGAGATCACGTGGGACACTGTCAACAAGAAGTTCAAAGAGGTTGTGGCTGCTAGGGGCCGGAAGGGCACTGGCAGATTTGAACAGGTTGAGCAGCTTACTTTCTTAACGAAGGTTGCGAAGACAGCCGCACAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCCCAGTTTGATGTTAATCCAGGGCTCAATGGGCACATGCCCATAAATGTATGGAAAAAATGTGTGCAAAACATGCTTGTCATTCTTGATATTCTAGTGCAGCATCCAAACATAGTGGTTGATGATTCGGTGGAACCAGATGAGAATGAGACTCAGAAAGGGGTTGACTATAATGGGCCGATTCGGGTTTGGGGTAACTTGGTTGCTTTCTTAGAAAGAATTGATGTTGAATTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACCCGGGACTATGTTGAGAGACTCAGGGATGAGCCCTTGTTTCTGGTTCTTGCCCAGAATGTTCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCTGCATCTAAGGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAAGAGGTTTATGTTGCAATGAAAAAATTGACTGAGCTGACAGAGGATGGAGATAATGGAGTGGAGGCAAGTGAGGAGAAAGGATTTGAGGAATCAAGAATTCCCACTGCATTTGTTGCTACCCCAGAGGTTGTGGCCCGGAAGCCCACCTTCCCTGAGAATAGCAGGACCATAATGGATGTATTGGTATCATTGATATACAAGTACGGCGATGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATACCACCATGCTCTTCTTGATGAATTCTCAATTGCCCGTGATCTGCTGCTTATGAGTCATCTGCAAGATAGTGTTCAACATATGGACATTTCAACGCAGATACTTTTTAACAGAGCTATGTCACAGTTGGGTTTATGTGCTTTTCGGGTTGGACTGATTTCTGAAGCCCATGGCTGCCTATCTGAACTGTACTCTGGTGGGAGGGTGAAAGAGTTACTTGCACAAGGTGTGTCACAAAGTCGCTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAAATGCCTTATCATATGCACATCAATCTTGAGCTCCTGGAGACAGTACATCTTGTATCTGCTATGCTGCTGGAAGTTCCTAATATGGCAGCCAATGTTCATGATGCAAAACGCAAACTCATATCTAAGACTTTCCGTCGCTTGCTTGAGGTGAGTGACAGACAAACATTCACTGGTCCACCAGAAAATGTAAGAGATCATGTTATGGCTGCCACGAGGTTTCTTAGCAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTGTGGAAATTTGTGAGAAATCGAGACACTGTGCTTGAAATGCTTAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCATCTTATGAATCCTTGAGCCTGGATCAGCTCACAAAATTTTTTGATCTCCCTGTTTCTTGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTCTTTTCCAAGATGTTGAACACTCTAGGCTGCAGGCCTTGGCATTCCAGTTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCAACAGAGGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGCAGAGATGGCCAGGACTATGCCGCTGCCGCTGCTGGTAGTGGAACAGCCTCGTCAGGTGGTAGATGGCAAGACCTGTCCCTTTCTCAGCCAAGGCAAAGCAGTGGGCGTGCAGGATATGTTGGTGGTGGTGGAAGGCCAATGGCATTAGGCCAAGGGAGTGGCTATTCCAGGGATCGATCGGGACGAGGATCAGGTGCTGGCTATCAGAGTGGACGATATCAGGGGGGTTCAGCATTGAGGGGACCCCATGGCGATGTATCTACACGCATGGTTAGCCTTAAGGGTGTTCGTGCTTAG 2781 0.4635 MASRFWTQGGSDSEEEESDYGEEDEHSAGEQAPNQDVTSKYFVDNASDSDDSDGQKRVVRSAKDKRFEEMVSTVDQMKNAIKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLDDFLVQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELITKCRENPESEEEKEEEESEDEYESDDIEPEQLPEAKSDSEASQYDNEKQDAGDGPWDQKLSKKDRLLDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTAAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQHPNIVVDDSVEPDENETQKGVDYNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPLFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYVAMKKLTELTEDGDNGVEASEEKGFEESRIPTAFVATPEVVARKPTFPENSRTIMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLETVHLVSAMLLEVPNMAANVHDAKRKLISKTFRRLLEVSDRQTFTGPPENVRDHVMAATRFLSKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKFFDLPVSCTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAGSGTASSGGRWQDLSLSQPRQSSGRAGYVGGGGRPMALGQGSGYSRDRSGRGSGAGYQSGRYQGGSALRGPHGDVSTRMVSLKGVRA* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1742 926 Coils Coil 145 172 - -
Gso3g1742 926 MobiDBLite consensus disorder prediction 1 62 - -
Gso3g1742 926 ProSiteProfiles PCI domain profile. 616 788 IPR000717 -
Gso3g1742 926 MobiDBLite consensus disorder prediction 844 863 - -
Gso3g1742 926 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 925 - -
Gso3g1742 926 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 717 805 - -
Gso3g1742 926 MobiDBLite consensus disorder prediction 46 62 - -
Gso3g1742 926 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 875 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso3g1742 926 MobiDBLite consensus disorder prediction 135 154 - -
Gso3g1742 926 MobiDBLite consensus disorder prediction 31 45 - -
Gso3g1742 926 SMART PINT_4 717 805 IPR000717 -
Gso3g1742 926 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 46 648 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso3g1742 926 MobiDBLite consensus disorder prediction 835 926 - -
Gso3g1742 926 MobiDBLite consensus disorder prediction 168 225 - -
Gso3g1742 926 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 925 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso3g1742 926 MobiDBLite consensus disorder prediction 195 225 - -
Gso3g1742 926 Pfam PCI domain 656 784 IPR000717 -
Gso3g1742 926 MobiDBLite consensus disorder prediction 176 194 - -
Gso3g1742 926 SUPERFAMILY "Winged helix" DNA-binding domain 712 787 IPR036390 -
Gso3g1742 926 MobiDBLite consensus disorder prediction 136 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1742 Gso-Chr3 43248193 43252267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1742 1 926 Eukaryotic Initiation Factors Gene Family AT3G56150 68.483 0.0 1180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1742 K03252 - gmx:100805203 1741.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1742 3 43248193 43252267 Gso18g0304 18 2765899 2771120 ECH
Gso3g1742 3 43248193 43252267 Gso3g1742 3 43248193 43252267 ECH