Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1730 ATGACTCTCTCTCGGCGACGTCACGAGCTATCATTTTTGACGTTGGAGTCCTCCTCCTCCACCGACACGCTTCCGCCGTTCGCCTCTAACGACACCTTGCAAAACTCACCGTTTCTCCACTCAAAAACTCCTCACCTAGGGAAGGCACGTAGCAAGCGCTCACGCGCAGCATCGGGGGACTGGTCCACGCGCCTAGAGCTGGTGAAGTCGCCGCAGGCGAATAAGAGAGAGGGAATGAATGTGGAGTGTTTCGGATGCAAATGCCTTCACTGTGGCACAGAGAAGACGCCGCAGTGGCGAACGGGATCAATGGGACCGAAAACTCTATGCAACATGTTCGACATGAGGTTCAAGTCCAGGAGGCTGGTGCCAGAATACTGCCCGACAGCGAGTCCAACGTTCATGTCAACGAAGCATTTGAATTCGCATCGAAAGGTTTTGGAGCTCAGGTGGCAGAAGGAGATGCAGCGATAA 474 0.5422 MTLSRRRHELSFLTLESSSSTDTLPPFASNDTLQNSPFLHSKTPHLGKARSKRSRAASGDWSTRLELVKSPQANKREGMNVECFGCKCLHCGTEKTPQWRTGSMGPKTLCNMFDMRFKSRRLVPEYCPTASPTFMSTKHLNSHRKVLELRWQKEMQR* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1730 157 Pfam GATA zinc finger 88 111 IPR000679 GO:0006355|GO:0043565
Gso3g1730 157 MobiDBLite consensus disorder prediction 14 62 - -
Gso3g1730 157 MobiDBLite consensus disorder prediction 14 41 - -
Gso3g1730 157 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 85 145 - -
Gso3g1730 157 PANTHER GATA TRANSCRIPTION FACTOR 9 16 157 - -
Gso3g1730 157 Gene3D - 84 156 IPR013088 GO:0006355|GO:0008270
Gso3g1730 157 PANTHER GATA TRANSCRIPTION FACTOR 16 157 - -
Gso3g1730 157 SMART GATA_3 82 132 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1730 Gso-Chr3 43149397 43149870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1730 47 156 C2C2-Gata Transcription Factor Family AT4G32890 54.331 1.69e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso3g1730 GATA 4.6e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1730 - - gsj:114405309 318.546