Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1729 ATGGAAAATGCAAGTACGTCGTCTAGCTTAGCGAGAACGAAATCGGATCAGCTAGCAGTGGAGACGGTGGCAACGACAGCTGAGAAGTCGCCACCGTCGGCGGAGGGCGGTGGAGCCCTGTCAAGGAAATCGAGCTGGAGGATGACGGCGGCGCCATCGCCGGGTGGCGGCGGTGGTGGGAGAAACACATACATAAGGAAGGCAAGGAGCGCTCAGTTGAAGGTTGAGGTGGACGAGGTTGGCAGCGGCGTGGCTCTTAGCCGAGCTTCCAGCGCCAGCTTGGGCCTCTCATTCTCCTTCACCGGCTTCACTCTCCCTCCTGATGAAATCGCCGATTCCAAACCATTCAGCGACGATGATATCCCGGAGGATATTGAAGCTGGAACTCCTAAGCCAAAGTTTCAGACGGAACCTACTCTGCCAATATATCTAAAGTTCACAGATGTAACCTACAAGTTAGTGATGAAAGGCATAACTACAACTAAGGAGAAGGATATCTTGAAGGGGATCACTGGTTCTGTAAATCCTGGGGAAGTTTTAGCATTGATGGGTCCTTCAGGAAGTGGAAAGACATCTTTGTTAAATCTGCTAGGAGGAAGGTTGATTCAATGCACAATTGGTGGCTCTATCACTTACAATGATCAACCTTATTCCAAGTTCCTAAAGAGCAGGATTGGATTCGTGACACAAGATGATGTTCTGTTTCCTCACCTTACTGTAAAAGAAACATTGACTTATGCAGCCCTCCTAAGATTGCCAAATACATTAAGGAAAGAGCAAAAGGAAAAACGAGCTTTAGAAGTCATTGAAGAGCTGGGATTGGAGAGGTGCCAAGACACTATGATAGGAGGTTCCTATGTTCGAGGAATATCTGGTGGAGAGAGGAAGCGAGTTTGTATTGGCAATGAGATCATAATCAACCCTTCACTTCTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCCTTGAGGATAGTTCAGATGCTACAAGACATAGCAGAGGCTGGTAAAACCGTAGTGACAACAATCCATCAACCGTCAAGCAGACTCTTTCATAAATTTGATAAGTTGATCCTTCTAGGAAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCTGATGCCATGGACTATTTCCAGTTTATAGGGTGTGCACCTCTTATTGCCATGAACCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACGTAAATGATATTTCTGTGCCATCAGAGTTAAAGGATAAAGTGCAGATGGGAAATGCTGAAGCTGAAACATCCAATGGGAAACCATCAGCTTCAGTTGTACAAGAGTATCTGGTGGAGGCATATGATTCTCGAGTTGCAGAAATAGAGAAGACAAAGCTAATGATTCCTGTCCCCCTTGATGAAGAACTGAAGTCTAAGGTTTGTTCTTGTAAAAGACAGTGGGGAGCAAGTTGGTTTGAGCAATTTTCCATATTATTTTCTAGAGGATTCAGAGAACGGAGGCATGACTACTTTAGCTGGTTGAGAATCACCCAAGTTCTAGCCACTGCAGTCATCTTAGGATTACTCTGGTGGCAATCAGATGCTAAAACACCAAAAGGTTTGCAAGACCAGGCAGGACTGCTTTTCTTTATTGCTGTGTTTTGGGGATTCTTTCCTGTCTTCACTGCTATATTCACATTTCCTCAAGAGAGAGCTATGCTGACTAAGGAACGAACAACCGATATGTACAGACTAAGTGCATATTTCGTGGCCAGAACTACAAGTGACCTTCTACTAGACCTGGTGCTACCAGTGTTTTTCCTCCTTGTTGTTTATTTCATGGCCAATTTGAGACTCGGTTCAGGGCGTTTTTTCTTTAGTATTCTTACCGTTTTTCTCTGCATCATAGCAGCTCAGGGTCTTGGACTTGCTATTGGGGCTACACTAATGGACTTAAAAAGGGCAACAACTTTGGCTTCAGTAACTGTGATGACTTTCATGCTGGCTGGAGGTTTTTTTGTGAAGAAAGTCCCCATATTTATATCATGGATTCGCTACATATCTTTCAACTACCATACGTATAAACTTTTGCTCAAGGTTCAATATGAACACATTACACCTACCATTGATGGGATCAGAATTGACAGTGGATTCACAGAGGTTGCTGCTCTGACAGCCATGGTTTTTGGTTACCGTTTATTGGCATATCTTTCTTTGCGGCGGATGAAACTTCTAGCTGGAAATTAA 2223 0.4404 MENASTSSSLARTKSDQLAVETVATTAEKSPPSAEGGGALSRKSSWRMTAAPSPGGGGGGRNTYIRKARSAQLKVEVDEVGSGVALSRASSASLGLSFSFTGFTLPPDEIADSKPFSDDDIPEDIEAGTPKPKFQTEPTLPIYLKFTDVTYKLVMKGITTTKEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGGRLIQCTIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLRKEQKEKRALEVIEELGLERCQDTMIGGSYVRGISGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASDAMDYFQFIGCAPLIAMNPAEFLLDLANGNVNDISVPSELKDKVQMGNAEAETSNGKPSASVVQEYLVEAYDSRVAEIEKTKLMIPVPLDEELKSKVCSCKRQWGASWFEQFSILFSRGFRERRHDYFSWLRITQVLATAVILGLLWWQSDAKTPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRLSAYFVARTTSDLLLDLVLPVFFLLVVYFMANLRLGSGRFFFSILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHITPTIDGIRIDSGFTEVAALTAMVFGYRLLAYLSLRRMKLLAGN* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1729 740 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 144 390 IPR003439 GO:0005524
Gso3g1729 740 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 29 734 - -
Gso3g1729 740 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 29 734 - -
Gso3g1729 740 Pfam ABC-2 type transporter 485 694 IPR013525 GO:0016020|GO:0140359
Gso3g1729 740 MobiDBLite consensus disorder prediction 1 63 - -
Gso3g1729 740 CDD ABCG_EPDR 141 372 - -
Gso3g1729 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 384 IPR027417 -
Gso3g1729 740 Pfam ABC transporter 167 318 IPR003439 GO:0005524
Gso3g1729 740 ProSitePatterns ABC transporters family signature. 290 304 IPR017871 GO:0005524
Gso3g1729 740 SMART AAA_5 176 367 IPR003593 -
Gso3g1729 740 MobiDBLite consensus disorder prediction 1 29 - -
Gso3g1729 740 Gene3D - 143 384 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1729 Gso-Chr3 43133068 43142570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1729 166 419 Calmodulin-binding Proteins AT2G36910 28.077 2.79e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1729 K05681 - gmx:100802030 1384.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1729 3 43133068 43142570 Gso3g1729 3 43133068 43142570 ECH
Gso19g1696 19 45890485 45899746 Gso3g1729 3 43133068 43142570 GST
Gso3g1729 3 43133068 43142570 Gso2g1612 2 37154765 37174083 PCT
Gso3g1729 3 43133068 43142570 Gso10g0791 10 11243016 11254278 PCT
Gso2g1612 2 37154765 37174083 Gso3g1729 3 43133068 43142570 PCT
Gso10g0791 10 11243016 11254278 Gso3g1729 3 43133068 43142570 PCT