Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1726 ATGCATTCCCAGAAAGTTGTAGAGATGGAAGACAAGACAGAAAGTCATATGAGTTCAGCTGCGGCCTTTGTTGAAGGGGGGATTCAAGAATCCTGTGATGATGCTTGCAGCATATGCCTTGAGGAGTTTGGTGCAAGTGATCCTTCGACGGTCACTACCTGCAAGCATGAGTTTCATCTGCAGTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATCCTACTAGTCAGGAATTGTTTGAGGTAGTAGAGCAGGAGAGAAGCTTGAGGGCTACCCCATCAAGAAATGCTGCTATTTTTCATCACCCTGCCTTTGGAGATTTTGAGTTGCAGCATTTACGCATGAGTCTAAATGATGCTGATTTTAAAGAGAGAATTATTCAACATTTAGCTGCTGCTGCAGCAATGAGGAGAGCTAACCAACTTGGTTGGAGGGAAGGGCAGCGAGCTCGTTCATCAGCTCATGGTCATCCACAATTCTTAGTGTTCTCTAATCAGCCTATTGCACCTTCATCAGTTGCTGGAGGAGAAAATGACCCAACTGCAATTCCTAATAGAAGTCCATCTACCCCAATAACATCCGTTGGAAATGAAGCATCGCAGCAGATCCTGCACCTTCAAACTCAAAGTTCTTCTTCAGCTTCTGGATCTCCTGTCATGGCTACAAATCCTCGAGGAATTTACTCTAATGAAAGAGGCTCTACTGCTTGTTCTTCAACAGCAAACCAAGATAGAGCAGAGCCATCAGAGTTGCAGTCATTTTCTGATTCTCTGCGATCCAGACTTAATGCAGTGTCCATGAGATACAAAGAGTCAATCTCAAAAGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCGTAGTTCTTCCATGTCAAAACTTGGTTCAGAAACAAGGAGGAGAGAGATAAATTCTGGAATTGCTAGTGTATCCCGATTGATGGAATCCCTTGAAACTAGTGAAAATAATAGAGTTGTGGGTACTTCTTTGTCAAATCATACGGAGGGTTGTTCCATAGGAGGGGTGAGCAACCAGAACAATGTTGAAGCTAGAGGGGAGAACTCTTCACATGATGACAATACTCCAGCTGCTTGTTCTGCTAACTCACATTTAAATTGA 1152 0.441 MHSQKVVEMEDKTESHMSSAAAFVEGGIQESCDDACSICLEEFGASDPSTVTTCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELFEVVEQERSLRATPSRNAAIFHHPAFGDFELQHLRMSLNDADFKERIIQHLAAAAAMRRANQLGWREGQRARSSAHGHPQFLVFSNQPIAPSSVAGGENDPTAIPNRSPSTPITSVGNEASQQILHLQTQSSSSASGSPVMATNPRGIYSNERGSTACSSTANQDRAEPSELQSFSDSLRSRLNAVSMRYKESISKGTRGWKERLFSRSSSMSKLGSETRRREINSGIASVSRLMESLETSENNRVVGTSLSNHTEGCSIGGVSNQNNVEARGENSSHDDNTPAACSANSHLN* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1726 383 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 6 380 - -
Gso3g1726 383 MobiDBLite consensus disorder prediction 342 383 - -
Gso3g1726 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 85 IPR013083 -
Gso3g1726 383 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Gso3g1726 383 SUPERFAMILY RING/U-box 28 84 - -
Gso3g1726 383 MobiDBLite consensus disorder prediction 179 266 - -
Gso3g1726 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 6 380 - -
Gso3g1726 383 SMART ring_2 36 76 IPR001841 -
Gso3g1726 383 Pfam Ring finger domain 35 76 IPR001841 -
Gso3g1726 383 MobiDBLite consensus disorder prediction 193 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1726 Gso-Chr3 43107105 43112434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1726 33 84 C3H Transcription Factor Family AT4G00335 44.231 1.46e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1726 K19043 - gmx:100800419 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1726 3 43107105 43112434 Gso3g1726 3 43107105 43112434 ECH
Gso19g1693 19 45867379 45874693 Gso3g1726 3 43107105 43112434 GST
Gso3g1726 3 43107105 43112434 Gso2g1635 2 38474527 38478892 PCT
Gso3g1726 3 43107105 43112434 Gso10g0749 10 10515265 10519577 PCT
Gso2g1635 2 38474527 38478892 Gso3g1726 3 43107105 43112434 PCT
Gso10g0749 10 10515265 10519577 Gso3g1726 3 43107105 43112434 PCT