Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1716 ATGAGTAGCAACACAACAGTTAATTCCCCTGGATTCCTTGGCTCAAGCAACATCAGTGGCTATAGCTATGGCATAGGAATTTCCATTGGAATTCTCTTGCTCATTATAACCATCACTTTAACTTCCTACTTCTGCACCAGATCACAGGTGTCATTTGCTCCAGCCACTAGGAATAGGAGACGCACCCCAAATGTCCTTGAACCACAGCACTCTATAGTTGATGTAAGTTTAGATGAAGCCACAATTCTGAGTTATCCAACCCTTTTGTACTCTGAAGCCAAGCTCAAGAAATCTGATTCCACTGCTACATGTTGCTCCATATGTCTGGCAGATTACAAGGGTACGGATATGCTTCGGATGCTACCAGATTGTGGGCACCAATTCCACCTCAAGTGCATAGATCCATGGTTGAGGTTGCATCCTACTTGTCCAGTTTGCAGAACTTCTCCGATTCCAACACCACTCTCAACTCCTCTTGCTGAAGTGGTTCCTTTAGCTAGCAGACAGGATTCATAG 516 0.4457 MSSNTTVNSPGFLGSSNISGYSYGIGISIGILLLIITITLTSYFCTRSQVSFAPATRNRRRTPNVLEPQHSIVDVSLDEATILSYPTLLYSEAKLKKSDSTATCCSICLADYKGTDMLRMLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRQDS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1716 171 SMART ring_2 105 146 IPR001841 -
Gso3g1716 171 CDD RING-H2_PA-TM-RING 104 147 - -
Gso3g1716 171 Pfam Ring finger domain 105 147 IPR001841 -
Gso3g1716 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 151 IPR013083 -
Gso3g1716 171 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Gso3g1716 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 169 IPR045899 -
Gso3g1716 171 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 3 169 - -
Gso3g1716 171 SUPERFAMILY RING/U-box 87 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1716 Gso-Chr3 43026558 43027564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1716 11 167 C3H Transcription Factor Family AT2G35910 63.522 2.48e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1716 - - gmx:100811799 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1716 3 43026558 43027564 Gso2g1652 2 38942575 38943787 PCT
Gso3g1716 3 43026558 43027564 Gso10g0731 10 10150687 10151678 PCT
Gso2g1652 2 38942575 38943787 Gso3g1716 3 43026558 43027564 PCT
Gso10g0731 10 10150687 10151678 Gso3g1716 3 43026558 43027564 PCT