Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1714 ATGCAAACTGTTTATCTTAAAGAACACGAAGGAAATGCGCACAATTTTGTGGGCACGTTGTCTTCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCTGTTCATCAGGGAGAGTCTTGTGGCCAAGTGAAACCCTTTTCATTGGAGCTGCCAAACTGCATAGACCAACTTGCTGCCACTAAGCCACTAGCAAGAGGAGCTGACCAAGTGTTGGGTAAAGGGCACATAACTCAGTTTACAATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAAAAGCTTCAGACAACCATGTCACTGCAGTCATCGCTTACTGATCCACAGTCTCGTTTTGAGATAGGGTTTAGTCTGCCCACGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGAACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGACTAAACGTCGCAAGCCCTATATGCATGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGCTTCTTGAACACTAAGAATTCTGTTGACGGAAATGGTAAAATTGGAAATGAAGTGCATAAAACTGTTGGTGAACAATTGCAGTCTAGTGGCTCTCAGAGTTCTGAATTCCTTCAATCTGAGGTTGGAACTTTTAATTCATCAAAAGAGACTAATGGAAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGCTTTTCTCTCAATCATCTTGGATCTGCTGTCCACTCTTTTGCAGACATGATAGATGGTGGGCGCGGTATGATCATACCCACCAAATGGGTTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGA 987 0.4407 MQTVYLKEHEGNAHNFVGTLSSAASAPWWSAFGSQSVHQGESCGQVKPFSLELPNCIDQLAATKPLARGADQVLGKGHITQFTIFPDDCKMSDDAQKLQTTMSLQSSLTDPQSRFEIGFSLPTICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDEPIYVNAKQYHGIIRRRQSRAKAVLDHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKNSVDGNGKIGNEVHKTVGEQLQSSGSQSSEFLQSEVGTFNSSKETNGSSPNISGSEVTSMYSRGGLDSFSLNHLGSAVHSFADMIDGGRGMIIPTKWVAAAGNCCNLKV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1714 328 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
Gso3g1714 328 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 327 IPR001289 GO:0003700|GO:0006355
Gso3g1714 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 160 215 IPR001289 GO:0003700|GO:0006355
Gso3g1714 328 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Gso3g1714 328 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
Gso3g1714 328 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Gso3g1714 328 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 2 327 - -
Gso3g1714 328 Gene3D - 159 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1714 Gso-Chr3 42998723 43003612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1714 20 328 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.512 8.86e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso3g1714 CBFB_NFYA 6.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1714 K08064 - gmx:100527677 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1684 19 45751065 45755495 Gso3g1714 3 42998723 43003612 GST
Gso3g1714 3 42998723 43003612 Gso2g1656 2 39051870 39057368 PCT
Gso3g1714 3 42998723 43003612 Gso10g0728 10 10088948 10093915 PCT
Gso2g1656 2 39051870 39057368 Gso3g1714 3 42998723 43003612 PCT
Gso10g0728 10 10088948 10093915 Gso3g1714 3 42998723 43003612 PCT