Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1713 ATGGCTGCTGTTTCCTCTTCTATCTGCAACAGAATATACAACCTTTCCTTCACACACCCTTCCCTTTCACTCACCACCTGCAACTTCCGTCAAAGACCCATATCCCAAAAACCATTCACTCTCAACCTCAAGTCCCAAAGTTTCACTCTTTCCTTTTTCCCACTTCACCGTCTTCCCCCTCCTTCCGCTGCCTTCGATGGGTTTGAAGTAGCTCAAGACACCACAGAGTTCCAACAAGACGAACCAGAAACAGAACCTGTGGAAAAAACAGAACAAGAGGAAGAGCAAAAGGTTTCTGATTCATACGATGCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATCACTAATTCCGCATTGGCTGAGCTCTTTGGAGAAGCTGGCACCGTGGCGTCTGTTGAGATTATGTATGATCGTGTCACGGACAGAAGCAGGGGATTTGCATTTGTTACAATGGGGAATGTTGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCGCAAGTTGGTGGTAGGACTGTTAAGGTAAACTTCCCAGAGGTACCCAAAGGAGGGGAAAGGTTGGTAATGGGGTCCAAAATACGGAACAGTTACAGAGGTTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGCTGGGGACTGACCTCACAGGGTCTTAGGGAAGCTTTTGCTGAGCAGCCAGGCGTATTGAGTGCCAAGGTCATCTATGAGAGGGACAGTGGAAGATCTCGAGGTTTCGGGTTTGTTTCTTTTGAAACTGCTGAATCTGCACAGGCTGCTTTGGACATTATGAATGGTGTGGAGGTACAAGGTCGGCCCTTGCGGTTGAATTTGGCTGAAGCAAGGGCACCTTCATCTCCTCCAGTAATTCAGAAAAATGTAGGAAGCAATGTTGAAAGCTCGGAATTGGTGTCTAGTGCCAGCACATAA 945 0.4709 MAAVSSSICNRIYNLSFTHPSLSLTTCNFRQRPISQKPFTLNLKSQSFTLSFFPLHRLPPPSAAFDGFEVAQDTTEFQQDEPETEPVEKTEQEEEQKVSDSYDAGRLYVGNLPYSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGSKIRNSYRGFVDSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDIMNGVEVQGRPLRLNLAEARAPSSPPVIQKNVGSNVESSELVSSAST* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1713 314 PANTHER OS02G0815200 PROTEIN 1 296 - -
Gso3g1713 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Gso3g1713 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 280 IPR000504 GO:0003723
Gso3g1713 314 SUPERFAMILY RNA-binding domain, RBD 105 287 IPR035979 GO:0003676
Gso3g1713 314 MobiDBLite consensus disorder prediction 74 100 - -
Gso3g1713 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Gso3g1713 314 CDD RRM_HP0827_like 106 182 - -
Gso3g1713 314 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 1 296 - -
Gso3g1713 314 Gene3D - 66 188 IPR012677 -
Gso3g1713 314 MobiDBLite consensus disorder prediction 82 100 - -
Gso3g1713 314 SMART rrm1_1 209 282 IPR000504 GO:0003723
Gso3g1713 314 SMART rrm1_1 106 179 IPR000504 GO:0003723
Gso3g1713 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Gso3g1713 314 Gene3D - 197 292 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1713 Gso-Chr3 42995081 42997431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1713 92 287 Eukaryotic Initiation Factors Gene Family AT3G16380 33.500 2.80e-26 106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1683 19 45747458 45749696 Gso3g1713 3 42995081 42997431 GST