Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1712 ATGAACGACTTGTTATCAGGTTTGTTCTCAAAGGGAAAACAAGAAGAGCATGTGATTGAGATAACAGAAGGTGGTGGCATAATGGAGTTGGAGAAGTTCTTGGAAGAAGTGGAATCAGTGAAGGAGGACTTGAAGGAGCTAGAGCGTCTCCACCTAAGCCTTGATGCTACAAACCAAAACGGAAAAGCGCTTCACAGCCCAAAGGGCGTTAGGGAGCTACGGTCTCGCATGGACCTGGACGTGGCTCTCTCTCTCACCAAAGCCAAGCACGTCAAGGGTCGCTTGGCGGCTCTCCACCGTGCCAACCAAGCCACCCTCTCCTTGCCCGATTGCGGGCCCGGTTCATACTCCGACCGGACCCGAACCGCGCTGGTGGGGGCCTTGACCAAGAACCTTAGACAGTCCATGGCGAGTTTCAATAAGCTGAGGGAGCAGATATCGTACGAGTACAGAGACACCGTGCAACGTAGATACTACGCTGTCACTGGAGAGAACCCTGATCAAGAAACCATCGACCTCCTCATCTCTACGGGTGAGAGCGAAACATTATTACAGAAAGCCATCCAACAGCAAGGGAGAGCCAGTGTCATGGACACAATCCAAGAGATTCAAGAGAGGCACGGCACGATGAAAGAGATAGAGAGAAGCCTACACGAGCTGCACCAAGTGTTCATGGACATGGCAGTGTTGATCCAACACCAGGGTGAACACTTGGATGACATAGAGAGCCACGTGGAACTCGCAAACTCCTTCGTGAGCAAAGGGGTACAGCATTTGCAGGTCGTGAGGAATCATCAGAAGAACACCCGTAACTTCACTTGTTTCGCCGTTCTGCTCTTCATCATCGTGTTGGTCATAATTCTCCCTATTGTTTTCAGAAATTGA 885 0.5073 MNDLLSGLFSKGKQEEHVIEITEGGGIMELEKFLEEVESVKEDLKELERLHLSLDATNQNGKALHSPKGVRELRSRMDLDVALSLTKAKHVKGRLAALHRANQATLSLPDCGPGSYSDRTRTALVGALTKNLRQSMASFNKLREQISYEYRDTVQRRYYAVTGENPDQETIDLLISTGESETLLQKAIQQQGRASVMDTIQEIQERHGTMKEIERSLHELHQVFMDMAVLIQHQGEHLDDIESHVELANSFVSKGVQHLQVVRNHQKNTRNFTCFAVLLFIIVLVIILPIVFRN* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1712 294 CDD SynN 30 187 IPR006011 GO:0016020
Gso3g1712 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 200 262 IPR000727 -
Gso3g1712 294 Gene3D - 189 293 - -
Gso3g1712 294 ProSitePatterns Syntaxin / epimorphin family signature. 206 245 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso3g1712 294 PANTHER SYNTAXIN-121 12 289 - -
Gso3g1712 294 Gene3D - 30 157 - -
Gso3g1712 294 SUPERFAMILY t-snare proteins 30 255 IPR010989 GO:0016020|GO:0016192
Gso3g1712 294 SMART SynN_4 25 151 IPR006011 GO:0016020
Gso3g1712 294 Pfam SNARE domain 238 288 IPR000727 -
Gso3g1712 294 Pfam Syntaxin 32 235 IPR006011 GO:0016020
Gso3g1712 294 Coils Coil 27 57 - -
Gso3g1712 294 SMART tSNARE_6 195 262 IPR000727 -
Gso3g1712 294 CDD SNARE_syntaxin1-like 199 260 - -
Gso3g1712 294 PANTHER SYNTAXIN 12 289 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1712 Gso-Chr3 42989206 42991640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1712 25 274 SNARE and Associated Proteins AT3G11820 62.000 1.41e-109 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1712 K08486 - gmx:100810727 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1712 3 42989206 42991640 Gso3g1712 3 42989206 42991640 ECH
Gso19g1681 19 45738865 45741250 Gso3g1712 3 42989206 42991640 GST
Gso3g1712 3 42989206 42991640 Gso2g1657 2 39067090 39069828 PCT
Gso3g1712 3 42989206 42991640 Gso10g0725 10 10043710 10046280 PCT
Gso2g1657 2 39067090 39069828 Gso3g1712 3 42989206 42991640 PCT
Gso10g0725 10 10043710 10046280 Gso3g1712 3 42989206 42991640 PCT