Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1707 ATGGACATTAACGAGATCGATGTTCCTTCATTCTTTCTCTGCCCCATTTCGTTAGAAATCATGAAGGATCCAGTGACGGTCTCAACAGGCATCACCTACGACCGTGAAAGCATCGAAACATGGCTGTTCTCGAAGAAAAACACGACATGCCCCATGACCAAACAGCCCTTGATAGATTACACCGATCTCACACCAAACCACACCCTTCGGAGACTCATCCAAGCGTGGTGTACCATGAACACTTCTCACGGCATCGAAAGGATCCCAACCCCCAAACCCCCCATTAACAAAAATCAAATTTCCAAGCTTCTCAAGGACGCTTCTCATTCCCCTCTCACATGCCTCAGGAGACTCAAATCCATCGCTTCAGGAAGCGAAACAAATAAGCGGTGCATGGAAGCTTCTGGTGTTGTTGAATTTCTAGCATCAATTGTAATCAACAACAACAACATCGTTTCTTCAAATGAGGCTGACTCAAATGAGGGATCTGGATTCGAGTTGAGAACAAGTGCAAGCGATGAAGCGTTGAGTTTGCTTCATAATCTTCATTTATCTGATCAAGGGTTGAAGACTCTCTTGAGCTTCAAAACCGGCGACTTTATTGAGTCTTTGACAAGAGTTATGCAAAAGGGGTTCTTTGAATCACGCGCTTATGCAGTGTTCTTGTTGAAATCCATGTCCGAAGTGGCTGAGCCAGTGCAATTATTGCATCTAAGACAGGACCTTTTTGTCGAACTAGTACAAGTCTTGAAGGATCAAATTTCTCAAAAGACATCAAAAGCAACACTCCAAACCCTGATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAAAGCTGTGGAAGCAGGTACCGTTCCTGTTTTGGTAGAGCTTCTTCTCGATTGCAAGGAGAGAAAGCCTTGCGAGATGATGCTGGTGTTGTTGGAAATTCTATGCCAGTGTGCTGAGGGAAGAGCAGAACTTTTGAATCATGCAGCAGGTCTTGCCATTGTGTCCAAAAAGATTCTAAGGGTTTCGACTTTGGCCAATGATAGAGCTGTTAAGATTCTTCTGTCTGTTTCGAGATTCTCTGCGACTCCACATGTTGTTCAAGAAATGCTTAAACTCGGTGTGGTCGCGAAATTGTGCTTGGTGCTTCAGGTGGATAGTGGAAACAAGGCTAAGGAAAAGGCAAGAGAGATTCTCAAATTGCATGCTCGTGCGTGGAGGAATTCTCCATGCATACCGAACAATTTGCTTAATTCATACCCGAACTATGTGTGA 1263 0.445 MDINEIDVPSFFLCPISLEIMKDPVTVSTGITYDRESIETWLFSKKNTTCPMTKQPLIDYTDLTPNHTLRRLIQAWCTMNTSHGIERIPTPKPPINKNQISKLLKDASHSPLTCLRRLKSIASGSETNKRCMEASGVVEFLASIVINNNNIVSSNEADSNEGSGFELRTSASDEALSLLHNLHLSDQGLKTLLSFKTGDFIESLTRVMQKGFFESRAYAVFLLKSMSEVAEPVQLLHLRQDLFVELVQVLKDQISQKTSKATLQTLIQFSPWGRNRIKAVEAGTVPVLVELLLDCKERKPCEMMLVLLEILCQCAEGRAELLNHAAGLAIVSKKILRVSTLANDRAVKILLSVSRFSATPHVVQEMLKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPNNLLNSYPNYV* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1707 420 PANTHER WDSAM1 PROTEIN 4 417 IPR045185 GO:0061630
Gso3g1707 420 Gene3D - 97 406 IPR011989 -
Gso3g1707 420 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Gso3g1707 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
Gso3g1707 420 SUPERFAMILY ARM repeat 113 392 IPR016024 -
Gso3g1707 420 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Gso3g1707 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 417 - -
Gso3g1707 420 SUPERFAMILY RING/U-box 4 84 - -
Gso3g1707 420 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Gso3g1707 420 CDD RING-Ubox_PUB 12 55 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1707 Gso-Chr3 42925444 42927116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1707 1 417 U-box Gene Family AT3G52450 58.486 7.08e-177 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1707 - - gmx:100809123 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1707 3 42925444 42927116 Gso3g1707 3 42925444 42927116 ECH
Gso19g1678 19 45703695 45705325 Gso3g1707 3 42925444 42927116 GST
Gso3g1707 3 42925444 42927116 Gso2g1665 2 39388660 39390508 PCT
Gso2g1662 2 39213897 39215616 Gso3g1707 3 42925444 42927116 PCT
Gso10g0717 10 9917985 9919753 Gso3g1707 3 42925444 42927116 PCT