Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1706 ATGGATGAAATTGAAGTTCCAAAGTATTTCATCTGCCCTATATCCCTTCAAATCATGAAAGACCCGGTAACCACTATAACAGGTATCACATACGACCGAGACAGCATTGAACACTGGCTATTCACCAACAAAAGCACCACATGCCCAATCACAAGACAACCTCTCCCTAAACACTCTGACCTAACCCCAAATCACACCCTTCTCCGCCTAATCCAATTTTGGTGCACCCAAAATTGTATTCATAGGGTTCCCACACCTAAGCCACCACTTAACAAGTTACAAGTCCTCAAGCTTCTCAAAGATATCAAGGACCCCAACTTGCAACTCAAAACGATCAAGGAATTGAAATTGCTAGCAACTCGAAACGAGAGAAATAATATTAACAAATGTTTGTTACTTCAGGCTGGTGTCCCAAAGGCCATGATCTTATTCATGTTGACTTGTTTTAGAAAAAGTCAATTTGATAAGGCTCTAGAAGAAGCTTTAAGTTTATTGCAACTTGTTGATGTGCCAGAAGAGGAAATAAAGCTTCTTCTAGCAGAGAAAAATGATCAAATATTGGATTCCCTAACGCGGGTTTTGGGCTCTGATGAGATGGAGAATTCAATTGCTGTGAAGTCCCATGCATTGATGTTACTCAACACATTCATGCAAGAAGCTAGCTCCAGCGTAATGGAAAGTGGGACTAACCAACAAGACACGAAGGCTGCTTTTCATGCCATGTTAATCGCTTGCCACTGGGGGAGAAACAGGATCATGATGGTTGAAAGTGGTGCAGTTTTTGAGCTCATAGAGATTGAATTATTGACGCCTGAAAAGAGAACCACGGAACTCACGATGGAGATACTGTTTCGTCTGTGTTCTTGTGCTGAGGTGTCATTGCTTTGTTGA 891 0.4164 MDEIEVPKYFICPISLQIMKDPVTTITGITYDRDSIEHWLFTNKSTTCPITRQPLPKHSDLTPNHTLLRLIQFWCTQNCIHRVPTPKPPLNKLQVLKLLKDIKDPNLQLKTIKELKLLATRNERNNINKCLLLQAGVPKAMILFMLTCFRKSQFDKALEEALSLLQLVDVPEEEIKLLLAEKNDQILDSLTRVLGSDEMENSIAVKSHALMLLNTFMQEASSSVMESGTNQQDTKAAFHAMLIACHWGRNRIMMVESGAVFELIEIELLTPEKRTTELTMEILFRLCSCAEVSLLC* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1706 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 81 IPR013083 -
Gso3g1706 296 PANTHER WDSAM1 PROTEIN 3 291 IPR045185 GO:0061630
Gso3g1706 296 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Gso3g1706 296 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Gso3g1706 296 CDD RING-Ubox_PUB 10 53 IPR045210 -
Gso3g1706 296 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Gso3g1706 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 291 - -
Gso3g1706 296 SUPERFAMILY RING/U-box 3 83 - -
Gso3g1706 296 SUPERFAMILY ARM repeat 95 291 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1706 Gso-Chr3 42917817 42919250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1706 2 290 U-box Gene Family AT3G11840 36.752 4.73e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1706 - - gmx:100808586 591.652