Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1704 ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCGGGTGGCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCCGGCTACATCCACTACTCCGACGCGCCGCCGCCGCAGCAGCAAACCTCACAAACCGCCGGAAACCTCGTGTTTCTCAACCCCGCCGCGGTTGCTGGAGGAAATAATAACTCGTTTAACCCCCACGCGCCGCCATCTCACACCCAACAATTCGTTGGAATCCCTCTCCCAAATTCCCAAGACCTCAACCACCACTCCATGCACGCGCACCACGATGTCTCAGCCCTGCATGGCTTCCTGCCGCGCATGCAGTACAATCCCTGGAACGCGCTCGACCCCGCCTTGGCGGCGCGTGAAAATCCACGCGCGCAGCAGGGGCTGTCTTTGGGGTTGGGGTCGTTCCGGGAGGGTCAGGCGCCGGCCATGTCCGGCGACGACCTGCGCATATCGGGCGGGTCGCCGTCGTCGGCTTCTGGGGTTACCAATAACGGAGCTTCTGGCATTCAGAGCGTGCTTTTGAGCTCAAAGTACTTGAAGGCAGCGCATGAGCTTCTAGAAGAGGTTGTGAATGTTAACAATGGAATTGGCACTGAGTTGGGGAAAAAAAGAGGGGGGCAGAACAAGGTAGTTGGAGAATCTTCCGCAGCAGGTAGTGGAGATGGTTCAGTTGGTGGGGAAGGGAACGGAAAGCGCAGCTCTGAGCTATCAACTGCAGAAAGACAAGAAATTCAAATGAAGAAAGCCAAACTAATTGGCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATAGTGGGTTCATCATTTGAGCAAGCTGCGGGGATTGGTTCAGCAAGGACTTACACTGCCCTTGCATTGCAAACAATCTCGAAGCAGTTTCGGTGCTTGAAAGATGCAATTGCAGGGCAGGTTCGCACTGCGAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGTAAAATGGAAGGTTCGAGGCTCAAATATGTTGACCATCATCTTCGGCAACAGCGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCACCCTTATCCTAAGGATTCGGACAAGCACATGCTTGCAAAACAAACAGGGTTAACAAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACACGGAGGAGATGAAGGATCATGAACAGAATCGGTCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTGCTTCGAAAATGTCAGCCCCACAAGACAAAGGTCCTTCCAATGAAACCGAAGCTAAGAGTTTCAATTCCAAACATGAGGTTTCTAAGAGCCAGAACACTGCTATGGTTTCAGTTTCTAGGCCATCAACATCACCACTTGGTGTGAATGTGAGAAGCCAATCAGGATTCAGCTTCATGGGGTCATCAGAGCTAGATGGGATCACACAAGGAAGTCCCAAGAAACCAAGGAACCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATGAGCATGGATGTGAAGCCCAATGATGAAAACAATGAGCAGCTCTCAATGAAATTTGGGGTTGAAAGGCAAGGCAGAAATGAGTCCTCTTTCATGGGAAATCAAACAAACTTTAATGGTGGGTTTGGACAGTATCCAATTGGGGATATTGGAAGGTTTGACACAGAGCAGTTTACACCAAGGCTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGACTCATTACCAGGAACTCATCAAACATTTCTCCCAAACCAAAACATTCAACTGGGAAGAAGCTTGGACATTGGTGAACCAAACGAGTTTGGTGCCATAAGCACTTCCTCTCCTCACTCAACAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTAA 2040 0.4946 MATYFHHGNSEIQSGGADGLQTLVLMNPGYIHYSDAPPPQQQTSQTAGNLVFLNPAAVAGGNNNSFNPHAPPSHTQQFVGIPLPNSQDLNHHSMHAHHDVSALHGFLPRMQYNPWNALDPALAARENPRAQQGLSLGLGSFREGQAPAMSGDDLRISGGSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNNGIGTELGKKRGGQNKVVGESSAAGSGDGSVGGEGNGKRSSELSTAERQEIQMKKAKLIGMLDEVEQRYRQYHQQMEIVGSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRTANKSLGEEDCFGGKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEEMKDHEQNRSEDKSSKSNEDSASKMSAPQDKGPSNETEAKSFNSKHEVSKSQNTAMVSVSRPSTSPLGVNVRSQSGFSFMGSSELDGITQGSPKKPRNHEMMHSPNSVPSMSMDVKPNDENNEQLSMKFGVERQGRNESSFMGNQTNFNGGFGQYPIGDIGRFDTEQFTPRLSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGAISTSSPHSTAAYESISMQNPKRFAAQLLPDFVT* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1704 679 ProSiteProfiles 'Homeobox' domain profile. 360 423 IPR001356 GO:0003677
Gso3g1704 679 MobiDBLite consensus disorder prediction 432 543 - -
Gso3g1704 679 MobiDBLite consensus disorder prediction 451 470 - -
Gso3g1704 679 MobiDBLite consensus disorder prediction 477 520 - -
Gso3g1704 679 Pfam Associated with HOX 178 314 IPR006563 -
Gso3g1704 679 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 621 - -
Gso3g1704 679 MobiDBLite consensus disorder prediction 432 450 - -
Gso3g1704 679 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 9 621 - -
Gso3g1704 679 SMART prehox3 173 315 IPR006563 -
Gso3g1704 679 Gene3D - 366 446 - -
Gso3g1704 679 MobiDBLite consensus disorder prediction 203 246 - -
Gso3g1704 679 CDD homeodomain 363 424 IPR001356 GO:0003677
Gso3g1704 679 Coils Coil 247 274 - -
Gso3g1704 679 MobiDBLite consensus disorder prediction 141 169 - -
Gso3g1704 679 SUPERFAMILY Homeodomain-like 364 430 IPR009057 -
Gso3g1704 679 Pfam Homeobox KN domain 380 419 IPR008422 GO:0003677|GO:0006355
Gso3g1704 679 SMART HOX_1 363 427 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1704 Gso-Chr3 42902495 42907083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1704 1 678 Homeobox Transcription Factor Family AT2G35940 49.322 3.31e-174 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso3g1704 POX 6.2e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1704 - - gmx:100797418 1316.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1704 3 42902495 42907083 Gso3g1704 3 42902495 42907083 ECH
Gso3g1704 3 42902495 42907083 Gso2g0056 2 685410 687734 PCT
Gso3g1704 3 42902495 42907083 Gso10g0715 10 9805173 9810805 PCT
Gso2g0056 2 685410 687734 Gso3g1704 3 42902495 42907083 PCT
Gso10g0715 10 9805173 9810805 Gso3g1704 3 42902495 42907083 PCT