Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1701 ATGCTGCACCCTTCCCTAACACTCCTCCTCCTCCTCCTCCTCTTTCACCCCAACGCCGGGGACCCTAACGACGCCAAAATCCTCCGGCAATTCCGCAACGGGCTGGACAACCCAGAGCAACTGCCATGGCCGGACGAGGGCGACGACCCATGTGGTTGGAAATACATTTTCTGCGACAGCAACAAACGCGTGAACCAGATTCAACCCAAGGGCTTAAACCTCAGCGGTCCCTTGCCGCAGAACCTGAACCAGCTCACCATGCTCTTCAACTTGGGCCTCCAGAACAACAGGCTCAACGGCCCATTACCCTCCTTCCGCGGTCTGTCAAAGCTCAAATACGCCTACCTCGACAACAACAACTTCGACTCCATCCCTTCAGATTTCTTCGACGGCCTCCAGAGTCTAGAAGTTTTGGCCTTGGACCATAATAACCTCAACGCCAGCACCGGCGGCTGGCAGTTACCCGAAACTCTCCAGGAGTCAACGCAGTTGACCAATTTCTCTTGTATGGGCTGCAACCTCACCGGCCCAATACCTCAATTTCTCGGCTCCATGAACTCACTGTCGTTTTTGAAGCTCTCTAACAACTACTTAACGGGTGACATTCCCCGGAGTTTAAACGACTCTGCGTTGCAGGTTCTGTGGCTGAACAACCAGCAGGGAGAGCGTCTCAGTGGGGGAATTGATGTTGTGGCTTCTATGGTTTCTCTCACGAGTTTGTGGCTTCACGGAAACGCTTTCACTGGGACGATCCCCGAGAACATTGGGGCTTTGAGCTCTTTGAAGGAGCTCAACCTTAATGGGAACAACCTCGTTGGGTTGGTTCCTCGAGGTTTGGGTGACATGAAGCTGGGCAAGCTGGATTTGAACAATAACCATTTTATGGGTCCGATTCCGGATTTTAAAGCGGCTACTGTGTCGTATGATGTTAATAATTTTTGTGTGAGCAAACCGGGGGTTCCTTGCGCGTTTGAGGTGATGGCGTTGTTAGGGTTTCTTGGTGGGTTGAATTATCCTCTGAATTTGGTTGATTCGTGGACTGGGAATGATCCTTGTGGGGGGAATTGGTTGGGGATAAAGTGTAATGCTGATGGAAAGGTGATTATGATTAATTTGCCTAATTTGAATCTTAGTGGGAGTTTAAGTCCTTCTGTTGCGAACTTGGGTTCTCTCGTTGAGATTAGGTTGGGGGGGAATGATATTAGTGGTGTGGTGCCTGGTAATTGGACTAGTTTGGCATCTTTGAAATCGTTGGATCTGAGTGGGAACAACATTTATCCTCCACTGCCTGACTTTAAGACTGGATTGAAACCTGTTGTTGTGGGGAATCCTCTGTTAAATGGTGGAGCGAAAACTACTCCTTCGGGGAACAATAACCCGTCAACTGGATCTGGGAATGTTGACCCTTCAGGGAACACTAACTCGAATTCTAGTTCAAGTGATTCTCATGAAACTAAGAAATCCAAAAGGAAACAGTTGGTTTCGATTGTTGCTCCGATTGCGGGTGTGGCAGCTGCGGCTTTTCTGCTCATTCCGCTCTATGCATACTGTTTCAGGAGGAGGAACGGTGGCTTCCAGGCTCCAACTTCACTGGTAATTCACCCTAGGGATCCATCGGATTCGGACAGTGCTGTGAAGATTGCTGTTGCTAATAATACCAATGGAAGCATTTCCACTTTGACAGGGAGTGGGTCTGGGAGTAGGAATAGTAGTGGAATTGGGGACTCTCACATCATTGAAGCTGGAAATCTAAGGATATCAGTTCAGGTTCTGAGGAAAGTGACCGAGAACTTTGCGCCTGAGAATGAGCTTGGCCGTGGTGGATTTGGGGTTGTTTATAAGGGGGAGTTGGATGATGGTACTAAAATTGCAGTGAAACGAATGGAAGCAGGTGTGATTAGTAGTAAGGCCTTGGATGAATTCCAGTCTGAGATTGCAGTTCTATCGAAAGTCCGACACCGGCATCTGGTGTCTCTTTTGGGTTATTCTACAGAGGGTAATGAAAGAATTCTAGTGTACGAGTATATGCCACAAGGGGCTCTCAGTAAGCATCTTTTCCATTGGAAGAGCCATGATCTGGAGCCCCTCTCTTGGAAGAGGAGACTCAATATTGCCTTGGATGTTGCCAGAGGGATGGAGTATCTCCATACTCTGGCTCACCAAAGCTTCATTCACAGAGATCTTAAGCCGTCAAATATCTTGCTTGCTGATGATTTCAAAGCAAAAGTCTCCGATTTTGGGTTGGTAAAACTTGCTCCTGAAGGGGAAAAAGCATCTGTAGTGACCCGGCTTGCAGGGACGTTTGGATATTTGGCGCCAGAATATGCAGTGACAGGAAAAATCACTACCAAAGCAGATGTTTTCAGTTTTGGGGTTGTGCTAATGGAGTTGTTGACTGGATTAATGGCACTTGATGAGGATAGACCTGAGGAAAGCCAATACTTGGCAGCATGGTTCTGGCATATAAAATCAGATAAGAAGAAACTAATGGCTGCTATCGATCCTGCCCTTGATGTAAAAGAAGAAACATTTGAGAGCGTCTCCATCATTGCTGAGCTAGCAGGGCACTGCACTGCAAGAGAACCAAGCCAACGGCCAGATATGGGTCATGCCGTGAATGTGTTGGCACCGCTTGTCGAAAAATGGAAACCCTTTGATGATGACACCGAGGAGTATTCCGGCATTGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGATGGCAAGAGGCAGAAGGAAAGGACTTAAGTTATATGGACCTTGAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTACTGGATTTGCAGATTCTTTTACTTCTGCTGATGGCCGGTGA 2838 0.4782 MLHPSLTLLLLLLLFHPNAGDPNDAKILRQFRNGLDNPEQLPWPDEGDDPCGWKYIFCDSNKRVNQIQPKGLNLSGPLPQNLNQLTMLFNLGLQNNRLNGPLPSFRGLSKLKYAYLDNNNFDSIPSDFFDGLQSLEVLALDHNNLNASTGGWQLPETLQESTQLTNFSCMGCNLTGPIPQFLGSMNSLSFLKLSNNYLTGDIPRSLNDSALQVLWLNNQQGERLSGGIDVVASMVSLTSLWLHGNAFTGTIPENIGALSSLKELNLNGNNLVGLVPRGLGDMKLGKLDLNNNHFMGPIPDFKAATVSYDVNNFCVSKPGVPCAFEVMALLGFLGGLNYPLNLVDSWTGNDPCGGNWLGIKCNADGKVIMINLPNLNLSGSLSPSVANLGSLVEIRLGGNDISGVVPGNWTSLASLKSLDLSGNNIYPPLPDFKTGLKPVVVGNPLLNGGAKTTPSGNNNPSTGSGNVDPSGNTNSNSSSSDSHETKKSKRKQLVSIVAPIAGVAAAAFLLIPLYAYCFRRRNGGFQAPTSLVIHPRDPSDSDSAVKIAVANNTNGSISTLTGSGSGSRNSSGIGDSHIIEAGNLRISVQVLRKVTENFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALDEFQSEIAVLSKVRHRHLVSLLGYSTEGNERILVYEYMPQGALSKHLFHWKSHDLEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLADDFKAKVSDFGLVKLAPEGEKASVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDPALDVKEETFESVSIIAELAGHCTAREPSQRPDMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDLSYMDLEDSKSSIPARPTGFADSFTSADGR* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1701 945 ProSitePatterns Protein kinases ATP-binding region signature. 604 626 IPR017441 GO:0005524
Gso3g1701 945 Gene3D Phosphorylase Kinase; domain 1 564 675 - -
Gso3g1701 945 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 7 945 - -
Gso3g1701 945 Gene3D Transferase(Phosphotransferase) domain 1 676 895 - -
Gso3g1701 945 Pfam Protein tyrosine and serine/threonine kinase 601 873 IPR001245 GO:0004672|GO:0006468
Gso3g1701 945 SUPERFAMILY Protein kinase-like (PK-like) 574 875 IPR011009 -
Gso3g1701 945 SUPERFAMILY L domain-like 21 301 - -
Gso3g1701 945 PANTHER OSJNBA0070M12.3 PROTEIN 7 945 - -
Gso3g1701 945 CDD STKc_IRAK 604 878 - -
Gso3g1701 945 SMART serkin_6 598 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1701 945 Pfam Leucine rich repeat N-terminal domain 22 59 IPR013210 -
Gso3g1701 945 Pfam Leucine rich repeat N-terminal domain 326 362 IPR013210 -
Gso3g1701 945 MobiDBLite consensus disorder prediction 447 490 - -
Gso3g1701 945 SMART LRR_typ_2 108 131 IPR003591 -
Gso3g1701 945 SMART LRR_typ_2 258 281 IPR003591 -
Gso3g1701 945 SMART LRR_typ_2 132 154 IPR003591 -
Gso3g1701 945 SMART LRR_typ_2 234 257 IPR003591 -
Gso3g1701 945 SMART LRR_typ_2 412 443 IPR003591 -
Gso3g1701 945 SMART LRR_typ_2 388 411 IPR003591 -
Gso3g1701 945 SMART LRR_typ_2 185 209 IPR003591 -
Gso3g1701 945 ProSiteProfiles Protein kinase domain profile. 598 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1701 945 MobiDBLite consensus disorder prediction 448 481 - -
Gso3g1701 945 Gene3D Ribonuclease Inhibitor 324 446 IPR032675 -
Gso3g1701 945 Pfam Leucine rich repeat 236 294 IPR001611 GO:0005515
Gso3g1701 945 MobiDBLite consensus disorder prediction 923 945 - -
Gso3g1701 945 SUPERFAMILY L domain-like 325 436 - -
Gso3g1701 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Gso3g1701 945 Gene3D Ribonuclease Inhibitor 21 320 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1701 Gso-Chr3 42843470 42847309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1701 74 880 Receptor kinase-like Gene Family AT5G07280 31.390 2.31e-82 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gso3g1701 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1701 - - gmx:100305366 1771.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1701 3 42843470 42847309 Gso3g1701 3 42843470 42847309 ECH
Gso3g1701 3 42843470 42847309 Gso2g1672 2 39627843 39631722 PCT
Gso3g1701 3 42843470 42847309 Gso10g0708 10 9685844 9690294 PCT
Gso2g1672 2 39627843 39631722 Gso3g1701 3 42843470 42847309 PCT
Gso10g0708 10 9685844 9690294 Gso3g1701 3 42843470 42847309 PCT