Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1675 ATGTCATCGATAAACCACTATTCACCGGAAACAACACTATACTGGACCAACGACCAACAGCAACAAGCCGCCATGTGGCTGAGTAATTCCCACACCCCGCGTTTCAATCTGAACGACGAGGAGGAGGAGGAGGAAGACGACGTTATCGTTTCGGACAAGGCTACTAATAACTTGACGCAAGAGGAGGAGAAGGTAGCCATGTTCGAGAAGCCGTTGACGCCGAGCGACGTCGGGAAGCTGAACCGGCTCGTGATTCCGAAACAGCACGCGGAGAAGCACTTCCCTCTCGACTCGTCGGCGGCGAAGGGGCTGTTGCTGAGTTTCGAGGACGAGTCCGGGAAGTGTTGGCGCTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGATGGAGCCGTTACGTCAAAGACAAACGCCTCCACGCTGGCGACGTCGTTTTGTTCCACAGACACCGCTCCCTCCCTCAACGCTTCTTCATCTCCTGCAGCCGCCGCCAACCCAACCCGGTCCCCGCTCACGTTAGCACCACCAGATCCTCCGCTTCCTTCTACTCTGCGCACCCACCTTATCCTGCGCACCACTTCCCCTTCCCATACCAACCTCACTCTCTTCATGCACCAGGTGGAGGGTCCCAAGGACAGAACGAAACGACACCGGGAGGGAACAGTAGTTCAAGTGGCAGTGGCAGGGTGCTGAGGCTCTTTGGTGTGAACATGGAATGCCAACCTGATAATCATAATGATTCCCAGAACTCCACACCAGAATGCTCCTACACCCACTTATACCACCATCAAACCTCTTCTTATTCTTCTTCTTCAAACCCTCACCATCACATGGTACCTCAACAACCATAA 867 0.5363 MSSINHYSPETTLYWTNDQQQQAAMWLSNSHTPRFNLNDEEEEEEDDVIVSDKATNNLTQEEEKVAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLDSSAAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVLFHRHRSLPQRFFISCSRRQPNPVPAHVSTTRSSASFYSAHPPYPAHHFPFPYQPHSLHAPGGGSQGQNETTPGGNSSSSGSGRVLRLFGVNMECQPDNHNDSQNSTPECSYTHLYHHQTSSYSSSSNPHHHMVPQQP* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1675 288 ProSiteProfiles B3 DNA-binding domain profile. 68 168 IPR003340 GO:0003677
Gso3g1675 288 MobiDBLite consensus disorder prediction 200 234 - -
Gso3g1675 288 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 19 263 - -
Gso3g1675 288 MobiDBLite consensus disorder prediction 211 234 - -
Gso3g1675 288 Pfam B3 DNA binding domain 68 166 IPR003340 GO:0003677
Gso3g1675 288 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 263 IPR044800 GO:0003700
Gso3g1675 288 SUPERFAMILY DNA-binding pseudobarrel domain 64 171 IPR015300 -
Gso3g1675 288 CDD B3_DNA 67 157 IPR003340 GO:0003677
Gso3g1675 288 Gene3D - 55 177 IPR015300 -
Gso3g1675 288 SMART B3_2 68 169 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1675 Gso-Chr3 42623638 42625628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1675 61 261 RAV Transcription Factor Family AT5G06250 49.541 1.28e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso3g1675 B3 3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1675 - - gmx:100802734 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1675 3 42623638 42625628 Gso3g1675 3 42623638 42625628 ECH
Gso19g1644 19 45359027 45360930 Gso3g1675 3 42623638 42625628 GST
Gso3g1675 3 42623638 42625628 Gso2g1704 2 40507308 40510147 PCT
Gso3g1675 3 42623638 42625628 Gso10g0655 10 7987284 7990004 PCT