Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1651 ATGCAAAAAATGCCAGGGACAAAGCAGAGAGATACATCCCAAAATCCAGACTCACCAGAGGGGAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCGAGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAAGAAGAGGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGACTAAGCTCTCAGATAAGACAAGAGTGGCAGACACTAAGGATGAAGTTGAGAAAAAGAAGCATGCTGAGCTTCTTGCACTTCCACCTCATGGGTCTGAGGTTTACATTGGGGGCATTCCTCAAAATGTTTCTGAAGAAGATTTGAGGGTCTTCTGTCAATCTGTGGGAGAAGTTTCAGAGGTTAGGATAATGAAGGGAAAAGAATCCGGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCATGACAAAGGAATTGGCATCTAAGGCTATTGAGGAGCTGAACAACTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCCACATCTCAAGTTAAGCACAAGTTGTTCATTGGTAATGTTCCTAAATATTGGACTGAAGGAGATATGAAAAAAGTTGTTGCTGAAATTGGCCCTGGAGTAATTTGTGTGGAACTGTTGAAGGACCCACAGAATTCTAGCCGTAACCGGGGATATGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAGTATTCAAGGCAGAAGATGTCAAACTCAAACTTTAAACTTGGCAGCAATGCTCCAACGGTAAAATCAGTGTATGTAAAGAACCTTCCAGAAAACATTACTCAGGATCGTCTCAAGGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTTCTGCTAAATCGGGTCAAGAAAAGAGCAGATTTGGTTTTGTTCACTTTGCTGAAAGGTCAAGTGCCATGAAGGCTTTGAAGAACACAGAGAAATATGAAATTGATGGACAATTGCTGGAGTGTTCGCTAGCAAAGCCACAAGCAAATTCACAAAAACCAGCTTTACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGGTGGTGCTATAGGTGCAGGATATGGTGCTGCTGGCTTTGCACAACCACTGATGTATGGTCCCGGACCAACCCCTGGTGGCATGGCAATGATGCCAATGATGTTATCAGATGGAAGGATTGCATACATAGTGCAACAGCCAGGGTTTCAACAGCCTGCCCCAGTATCCCGACATGGGAGGAGTGGTGGCAGTAGCTCCAGTGGTGGGAAATGCAGTAATGATGATAATCGCAATCGTGGGCATGGCCGCTATCATCCCTACTAA 1368 0.4379 MQKMPGTKQRDTSQNPDSPEGNSEPEKPTDSDERVDFDGDNDQEETMEEEVEYEEVEEEEEEEEEEEEEEEEEEEEEETKLSDKTRVADTKDEVEKKKHAELLALPPHGSEVYIGGIPQNVSEEDLRVFCQSVGEVSEVRIMKGKESGEAKGYAFVTFMTKELASKAIEELNNSEFKGKRIKCSTSQVKHKLFIGNVPKYWTEGDMKKVVAEIGPGVICVELLKDPQNSSRNRGYAFIEYYNHACAEYSRQKMSNSNFKLGSNAPTVKSVYVKNLPENITQDRLKELFEHHGKITKVVLPSAKSGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQLLECSLAKPQANSQKPALLPTYPPHLGYGMVGGAIGAGYGAAGFAQPLMYGPGPTPGGMAMMPMMLSDGRIAYIVQQPGFQQPAPVSRHGRSGGSSSSGGKCSNDDNRNRGHGRYHPY* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1651 455 Coils Coil 43 84 - -
Gso3g1651 455 SUPERFAMILY RNA-binding domain, RBD 264 351 IPR035979 GO:0003676
Gso3g1651 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 274 IPR000504 GO:0003723
Gso3g1651 455 SMART rrm1_1 269 342 IPR000504 GO:0003723
Gso3g1651 455 SMART rrm1_1 191 268 IPR000504 GO:0003723
Gso3g1651 455 SMART rrm1_1 111 184 IPR000504 GO:0003723
Gso3g1651 455 SMART rrm2_1 111 184 IPR003954 GO:0003676
Gso3g1651 455 SMART rrm2_1 269 342 IPR003954 GO:0003676
Gso3g1651 455 Gene3D - 191 265 IPR012677 -
Gso3g1651 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 346 IPR000504 GO:0003723
Gso3g1651 455 MobiDBLite consensus disorder prediction 35 78 - -
Gso3g1651 455 PANTHER GEO13361P1-RELATED 14 453 - -
Gso3g1651 455 MobiDBLite consensus disorder prediction 418 455 - -
Gso3g1651 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Gso3g1651 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 258 IPR000504 GO:0003723
Gso3g1651 455 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 339 IPR000504 GO:0003723
Gso3g1651 455 PANTHER - 14 453 - -
Gso3g1651 455 SUPERFAMILY RNA-binding domain, RBD 107 257 IPR035979 GO:0003676
Gso3g1651 455 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Gso3g1651 455 CDD RRM_SF 112 184 - -
Gso3g1651 455 Gene3D - 266 355 IPR012677 -
Gso3g1651 455 MobiDBLite consensus disorder prediction 79 93 - -
Gso3g1651 455 MobiDBLite consensus disorder prediction 418 441 - -
Gso3g1651 455 MobiDBLite consensus disorder prediction 1 22 - -
Gso3g1651 455 Gene3D - 34 190 IPR012677 -
Gso3g1651 455 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1651 Gso-Chr3 42451036 42458396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1651 112 427 Eukaryotic Initiation Factors Gene Family AT4G34110 21.751 8.84e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1651 K13161 - gmx:100798476 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1651 3 42451036 42458396 Gso3g1651 3 42451036 42458396 ECH