Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1640 ATGATGGAGTTGAAAGAGATTCAGAGACTCGAAGGCCACACCGATAAGGTTTGGAGCTTGGCCTGGAACCCGACCACCGGTCACGCCGGTATCCCACTCGTCTTCGCTTCTTGCAGCGGCGACAAAACCGTCCGAATCTGGGAGCAGAACCTCTCCTCTGGCCTCTGGGCCTGCACGGCGGTTCTGGATGAAACGCACACTCGAACTGTTCGATCTTGTGCTTGGTCACCGTCGGGTAAGCTATTGGCCACTGCAAGCTTCGATGCCACCACTGCCATTTGGGAAAATGTTGGTGGTGATTTTGAGTGTGTTTCTACTTTGGAGGGACACGAAAATGAAGTCAAGTGTGTGTCTTGGAACGCGGCTGGGACGTTGCTTGCAACTTGTAGTAGAGATAAGTCTGTTTGGATATGGGAAGTGCTGCCTGGGAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACACTCGCAGGATGTGAAAATGGTGAAGTGGCATCCCACAGAGGATATCTTGTTTTCATGTAGCTACGATAATAGTGTTAAGGTTTGGGCGGATGAAGGTGATAGTGATGATTGGCAGTGTGTTCAAACGCTTGGGGAACCCAATAACGGTCATACTTCCACTGTTTGGGCCCTCTCCTTCAATGTGAGTGGTGACAAAATGGTTACGTGTAGTGATGATCTTACACTGAAGGTATGGGAAACAGAAAGTGTAGGGACGCAATCTGGTGGTGGATTTGCACCTTGGACACATCTTTGCACTCTTTCAGGGTATCATGATCGGACAATATTCTCAGTTCATTGGTCAAGAGAAGGTATCTTTGCCAGTGGAGCCGCAGATAATGCTATACGGCTTTTTGTGGATGACAATGAAAGTCAGGTTGGTGGTCCTCTCTACAAGTTGCTGCTGAAGAAGGAGAAGGCCCATGACATGGATATAAATTCTGTGCAGTGGAGCCCTGGGGAGAAGCCGGTACTAGCCTCTGCAAGCGATGATGGGACAATCAAGGTGTGGGAGTTGACATCATACTAG 1032 0.4922 MMELKEIQRLEGHTDKVWSLAWNPTTGHAGIPLVFASCSGDKTVRIWEQNLSSGLWACTAVLDETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKCVSWNAAGTLLATCSRDKSVWIWEVLPGNEFECVSVLQGHSQDVKMVKWHPTEDILFSCSYDNSVKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNVSGDKMVTCSDDLTLKVWETESVGTQSGGGFAPWTHLCTLSGYHDRTIFSVHWSREGIFASGAADNAIRLFVDDNESQVGGPLYKLLLKKEKAHDMDINSVQWSPGEKPVLASASDDGTIKVWELTSY* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1640 343 ProSitePatterns Trp-Asp (WD) repeats signature. 126 140 IPR019775 -
Gso3g1640 343 ProSitePatterns Trp-Asp (WD) repeats signature. 221 235 IPR019775 -
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 63 95 - -
Gso3g1640 343 Gene3D - 32 343 IPR015943 GO:0005515
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 140 IPR001680 GO:0005515
Gso3g1640 343 ProSitePatterns Trp-Asp (WD) repeats signature. 326 340 IPR019775 -
Gso3g1640 343 SUPERFAMILY WD40 repeat-like 3 338 IPR036322 GO:0005515
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 63 95 IPR001680 GO:0005515
Gso3g1640 343 PANTHER WD40 PROTEIN CIAO1 3 342 IPR028608 GO:0016226|GO:0097361
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 107 140 - -
Gso3g1640 343 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 3 342 - -
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 183 - -
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 10 48 IPR001680 GO:0005515
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 183 IPR001680 GO:0005515
Gso3g1640 343 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 2 342 IPR028608 GO:0016226|GO:0097361
Gso3g1640 343 PRINTS G protein beta WD-40 repeat signature 35 49 IPR020472 -
Gso3g1640 343 PRINTS G protein beta WD-40 repeat signature 126 140 IPR020472 -
Gso3g1640 343 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Gso3g1640 343 SMART WD40_4 55 95 IPR001680 GO:0005515
Gso3g1640 343 SMART WD40_4 100 139 IPR001680 GO:0005515
Gso3g1640 343 SMART WD40_4 3 48 IPR001680 GO:0005515
Gso3g1640 343 SMART WD40_4 145 184 IPR001680 GO:0005515
Gso3g1640 343 SMART WD40_4 191 234 IPR001680 GO:0005515
Gso3g1640 343 SMART WD40_4 299 339 IPR001680 GO:0005515
Gso3g1640 343 SMART WD40_4 248 287 IPR001680 GO:0005515
Gso3g1640 343 Pfam WD domain, G-beta repeat 307 338 IPR001680 GO:0005515
Gso3g1640 343 Pfam WD domain, G-beta repeat 6 47 IPR001680 GO:0005515
Gso3g1640 343 Pfam WD domain, G-beta repeat 58 94 IPR001680 GO:0005515
Gso3g1640 343 Pfam WD domain, G-beta repeat 102 138 IPR001680 GO:0005515
Gso3g1640 343 Pfam WD domain, G-beta repeat 192 233 IPR001680 GO:0005515
Gso3g1640 343 Pfam WD domain, G-beta repeat 147 183 IPR001680 GO:0005515
Gso3g1640 343 CDD WD40 6 339 - -
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 237 IPR001680 GO:0005515
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 343 - -
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 10 48 - -
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 237 - -
Gso3g1640 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 343 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1640 78 342 U-box Gene Family AT2G33340 26.038 8.97e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1640 K24730 - gmx:100778826 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1640 3 42378796 42384562 Gso3g1640 3 42378796 42384562 ECH