Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1624 ATGAACAACGTCTCCATGATGGATGCGGAATCGGAGAAGCGCTCTGCTTCCACCATCTCTTTTTCTTCTTCATCTTCTAACTCGTCTTCCTCCTGCCACCGTTTGGATCGGCTCGTCGACGCCGAGGAGATTCAAGCGGCGGAGACTCTCGCGCAGTTGGCAATGCGCGACTCTCATTCCGCCGATAAATGGTGCACCAAACAGGACACAACCCGAGTCACGCGCGAGTCACCGACTCTTCTTCATTCGGATCTCTCACTTGGGCCCGGGGGCCAAGCTATTGCAGGTCAGTATCCAGATGAAAAGATATCCACTACAACTGTAGAAACAGAAATGTTTCAGCAGGATGACTGCTCGAGACACATGAAGGTGGAGCAGGATGCTGATGTATTACCTAACACAAGTTACTCCTTAGTTCGAAGCCGCAAGTCAAGGCGAAATTTAACTGAGGAAGAAAAAGAAGTAAGGAGGATACGTAGGATATTGGCAAATAGAGAGTCAGCTAGACAGACAATTCGCCGTAGGCAGGCTTTGTGTGAGGAGTTAACTAGAAAAGCTGCCTCTTTGGTGGTGGAGAATGAAAACCTAAAGAGGGAGAAGAAATTGGCTTTGAATGAGTATCAGTCTTTGGAGACTACAAATAAGCACTTGAAGGCACAGATAGCCAAGTCAATAAACACTGAAGTGGAGAAAACTCCTGTTGAGCCTGTGTCATCTGTGGCTGAGGTAACACCTTTGTCTGGTAACGGTCCATGGTTCCTTTATAACCATTTTCCAGTTCCACAGATATTTTGGCCTTCCATCCTTCAGTTTTCTAATCCGGTTCATTTACAAAATACATCATTGAATTCCTTCTCCATTCCACCTAATGCCTATGTTCCTTGTTCTTCCGAATCTGAATCACGTCACAAGCAAAATAACCTTATAAATGATAATCGAACACAAAATCCATTTTACATGTTTCCATGTCCTTGGTTATTCCCTCTTCCACAGTTTGGAAATCAACAATCATCTCCTTCCAGTAGCCTGAAAGATGAACAAGATAATCTATCTCTAGGTAAACCATGTAGTTCTAGTTCATCTTTGAATACAATGGCAAATGTGGATTATCAAGCAGCGTTACCTATCAAACTTAAAACAGCAGCTTCTGGCTGGACAGAGGCCATATCTATTAATGGCCCTGGTTGGGCCACTCCAAGATCTTCTTTGGATGGAGGTGAGAAGAAAACAGGATGTTACATTATAGAAAAATATCATGAACCTTCACTTGGTTGTAATGGTCATGCTTCTGCTGTCAAACAAGAACATGAATTTCAATTACATTCTGCTCCTAACAATAAAGTATCTTCAACAGCTTATATTGCAACTTCTTCACTGGAAAAGAAACAAGGACAGTGCATTTGCCAGGGGAGAAATCTAGTGGATGCAGTTGCTGCTGCAGAAGCAAGAAAGAGGAGAAAGGAACTAACAAAGCAGAAAAGCATCCATAACCGCCAGTCCCGGATGCACTGTTGA 1515 0.435 MNNVSMMDAESEKRSASTISFSSSSSNSSSSCHRLDRLVDAEEIQAAETLAQLAMRDSHSADKWCTKQDTTRVTRESPTLLHSDLSLGPGGQAIAGQYPDEKISTTTVETEMFQQDDCSRHMKVEQDADVLPNTSYSLVRSRKSRRNLTEEEKEVRRIRRILANRESARQTIRRRQALCEELTRKAASLVVENENLKREKKLALNEYQSLETTNKHLKAQIAKSINTEVEKTPVEPVSSVAEVTPLSGNGPWFLYNHFPVPQIFWPSILQFSNPVHLQNTSLNSFSIPPNAYVPCSSESESRHKQNNLINDNRTQNPFYMFPCPWLFPLPQFGNQQSSPSSSLKDEQDNLSLGKPCSSSSSLNTMANVDYQAALPIKLKTAASGWTEAISINGPGWATPRSSLDGGEKKTGCYIIEKYHEPSLGCNGHASAVKQEHEFQLHSAPNNKVSSTAYIATSSLEKKQGQCICQGRNLVDAVAAAEARKRRKELTKQKSIHNRQSRMHC* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1624 504 PANTHER G-BOX-BINDING FACTOR 3-RELATED 6 499 IPR044827 GO:0003700|GO:0006355|GO:0043565
Gso3g1624 504 MobiDBLite consensus disorder prediction 336 359 - -
Gso3g1624 504 SUPERFAMILY Leucine zipper domain 155 211 IPR046347 GO:0003700|GO:0006355
Gso3g1624 504 CDD bZIP_plant_GBF1 157 208 IPR045314 GO:0003700|GO:0006355
Gso3g1624 504 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 154 217 IPR004827 GO:0003700|GO:0006355
Gso3g1624 504 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 6 499 - -
Gso3g1624 504 SMART brlzneu 152 216 IPR004827 GO:0003700|GO:0006355
Gso3g1624 504 MobiDBLite consensus disorder prediction 485 504 - -
Gso3g1624 504 Coils Coil 165 220 - -
Gso3g1624 504 MobiDBLite consensus disorder prediction 1 31 - -
Gso3g1624 504 Pfam bZIP transcription factor 152 214 IPR004827 GO:0003700|GO:0006355
Gso3g1624 504 MobiDBLite consensus disorder prediction 489 504 - -
Gso3g1624 504 Coils Coil 479 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1624 Gso-Chr3 42235228 42240287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1624 143 504 bZIP Transcription Factor Family AT1G19490 36.559 4.77e-49 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso3g1624 bZIP_1 2.4e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1624 - - gmx:778152 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1624 3 42235228 42240287 Gso3g1624 3 42235228 42240287 ECH
Gso19g1603 19 45007872 45012959 Gso3g1624 3 42235228 42240287 GST