Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1622 ATGGGTTCATTCTCTGGCACTTGTGAAATAGTTGAAGCAAGGGGGGAGCTAAATACAAGGAAAGCTCCTGGGGTTTATCAGTCCAGTTCTGAGTGTAGCACATCTGAGAAAAATCATAAACTTTCGGTGCTGAAATTGGGATACAAGGATGATCTAGACGATGATATCAACAAGCTTTTTGAATCGATTGCTCTTAAATCTTCATCAAGGGATTTGAGCCTTTTCCAAGATGGTACAAGTCCTAGGCTGAAAAGTGCATTAAAAAAGCCAATTACAACGGGTGTTCCTCGGTCCCCAAGAGTTGGGACTTCTGAGTCCGTTAATTTGAAGCAAGCATTAAGAGACCTTTGTATATCCAAGGCATCAGAAATGGCTGCTATGAAACGATTATCAAAGTCAACAACAGCTTCTCCTAGATTATCTGAAGTTGGGAAGATACAGACATTGTACAATTCAGTTGTAGCTGAAACCTGTCGATCTGGGTCTTCCTTTGTTGAGAGCAAGGGACATCAAATTGAAATATCTCTAGTGCCAGAAAAAGGCAAATCCCTTTCCTTGGAGAAAACCTCTCAATCTTATCAAACTTCCCAAATTGCATCGTCGAGCCGAAACATTCATTCTTCTTGGGAAATTGCTGTTGCAACTACTAAATATGATGCTGGGAGTTCATTGATACAAAGTGATTTGGCATGCTCATCAAGTAAAGTTGGGATTCAATCACAACGAGTGGTACCTGTTGAAACAGAAGAACAAGCATCTGCCTCTTCTCCCTCTCTTTATAATACATTTGGAAGCAAATCAGAGGTGCCCAAAAATGCTTCCTCCCCTAAAAAGTTGGGAAATAAAGCATATATGTCAAATACTGGGAAGAAAGGTAGGTTGCAAACAGTATCTTCATCTACTTCTGTAAATGACAACAGAGTTAACAAACCGCCATGCCATGCCCCTCGCACTGTTAAATCGGTCATCAAGAACAAGAATCTGAGTAAGAAGAAACAAAAGGAGGATTCAGGTTCTGCTTTGCATGGTCCTACACCCAATGAAGTCAATAAGCCAGTTCCTGGTACACCTCGGCTAATTTGTGAGAGATGTAGGTGTGCTTTGGAAAATACTTGCGAAGAAAAAAACCAAGATATTGTGGCATTGGACTCTATCAGTCCTGGAGATGGAGTAAACTTGAGTAATGTACACTCTGGTTCAAATAAACCTGGTTTGGTGTCAAGTAGTGTTAATAAAAGCAAAACAGGTGCAAAAGTGAAGAACACCAAGTTGAAAGAGCAAATTGATTTTTCACAAAGTTCAAAGAGTAGTCAAGGTGAGTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAACGTAAGTGGTTCAAGTCGTAGCACTAGGCCTCACATGTCAAAGGATGTCAGGTGGGCAGCCATACGACATGCTCAAATGCAGCATGGAGTCTTGGGCTTGAGACACTTCAATCTTTTAAAGAAACTTGGTTGTGGAGACATTGGGACTGTATATCTTGCGGAACTAATTGGCACTAGCTGCCTGTTTGCTATTAAGGTCATGGACAATGAATTTTTGGAAAGAAGAGAGAAGATGCCTAGGGCTCAAACTGAGAGAGAAATATTAAGGATCCTGGATCACCCTTTTCTTCCCACAATGTATGCACAATTTACATCAGATAATCTATCGTGTCTGGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGGTAGATATTTCTCGGAGCCAGCAGCAAGGTTTTATGTTGCTGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCCGAAAACATTCTTGTTCGGGAAGATGGCCACATTATGCTCACAGATTTTGATCTGTCCCTGAGGTGTGCTGTTAACCCAACGCTTCTGAAATCATCTTCTGATGTTGACCCTGCAAAAATTTCAGGTCTAAGTGCACAAGCAAGTTGCATTGAGCCATTTTGCATTGAACCATCTTGTCAAGTTCCATGCTTCAGCCCAAGATTGCTACCCGCTGCTGCAAAAGCAAGGAAACTAAAAGTTGATCTTGCAGCCCAGGTCAGATCATTGCCACAGCTTGTGGCTGAGCCCACTGATGCAAGATCAAACTCATTTGTTGGCACACATGAATACTTGGCTCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTCTATGAACTTTTGTACGGTAGAACACCCTTTAAAGGTTCAAACAATGAAGAAACATTGGCCAACGTAGTGTTGCAGGGTCTTCGATTCCCCAAGCACCCAAATGTTAGTTTCCAAGCAAAGGATCTGATTAGAGGGTTGTTGGTTAAAGAGCCCGAAAACCGTTTGGGTTCAGAGAAAGGAGCTGCTGAGATTAAACAGCACCCCTTCTTCGAGGGCCTTAACTGGGCCTTAATTCGTTGCGCTGTCCCTCCAGAACTTCCAGACTTTTATGATTTTGGAGTTTCAGACATGGTGAACCCACAGGGCAAGGGTGCTAAGTACTTGGAGTGTAAAGTAGGAGAGCATGTAGAATTCGAGTTGTTTTAA 2616 0.4235 MGSFSGTCEIVEARGELNTRKAPGVYQSSSECSTSEKNHKLSVLKLGYKDDLDDDINKLFESIALKSSSRDLSLFQDGTSPRLKSALKKPITTGVPRSPRVGTSESVNLKQALRDLCISKASEMAAMKRLSKSTTASPRLSEVGKIQTLYNSVVAETCRSGSSFVESKGHQIEISLVPEKGKSLSLEKTSQSYQTSQIASSSRNIHSSWEIAVATTKYDAGSSLIQSDLACSSSKVGIQSQRVVPVETEEQASASSPSLYNTFGSKSEVPKNASSPKKLGNKAYMSNTGKKGRLQTVSSSTSVNDNRVNKPPCHAPRTVKSVIKNKNLSKKKQKEDSGSALHGPTPNEVNKPVPGTPRLICERCRCALENTCEEKNQDIVALDSISPGDGVNLSNVHSGSNKPGLVSSSVNKSKTGAKVKNTKLKEQIDFSQSSKSSQGEYSSSTSTSDESNVSGSSRSTRPHMSKDVRWAAIRHAQMQHGVLGLRHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDNEFLERREKMPRAQTEREILRILDHPFLPTMYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRYFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVNPTLLKSSSDVDPAKISGLSAQASCIEPFCIEPSCQVPCFSPRLLPAAAKARKLKVDLAAQVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQGLRFPKHPNVSFQAKDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAVPPELPDFYDFGVSDMVNPQGKGAKYLECKVGEHVEFELF* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1622 871 MobiDBLite consensus disorder prediction 246 356 - -
Gso3g1622 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Gso3g1622 871 ProSiteProfiles Protein kinase domain profile. 488 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1622 871 MobiDBLite consensus disorder prediction 246 308 - -
Gso3g1622 871 PANTHER FLIPPASE KINASE 1-RELATED 1 871 - -
Gso3g1622 871 MobiDBLite consensus disorder prediction 392 465 - -
Gso3g1622 871 SUPERFAMILY Protein kinase-like (PK-like) 462 841 IPR011009 -
Gso3g1622 871 CDD STKc_phototropin_like 486 838 - -
Gso3g1622 871 SMART serkin_6 488 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1622 871 Pfam Protein kinase domain 489 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1622 871 Pfam Protein kinase domain 717 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1622 871 MobiDBLite consensus disorder prediction 426 461 - -
Gso3g1622 871 Gene3D Phosphorylase Kinase; domain 1 488 571 - -
Gso3g1622 871 Gene3D Transferase(Phosphotransferase) domain 1 572 829 - -
Gso3g1622 871 MobiDBLite consensus disorder prediction 392 417 - -
Gso3g1622 871 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1622 Gso-Chr3 42209658 42213236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1622 1 871 AGC Kinase Gene Family AT3G52890 52.401 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso3g1622 Pkinase 3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1622 - K08286 gmx:100792120 1661.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1600 19 44981730 44985286 Gso3g1622 3 42209658 42213236 GST
Gso3g1622 3 42209658 42213236 Gso10g0585 10 6779134 6784403 PCT
Gso10g0585 10 6779134 6784403 Gso3g1622 3 42209658 42213236 PCT