Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1617 ATGGACTTCCATCTGAAGCAATGGAGAAACCAGCACGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAACAACAGCCATCAGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCTTCTGCTACAATGACTTCTACCACCACTAACAGATTATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCCGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCTCCACACTATTATCACCCTCTCCAACATTACCAACCTTCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAGTGGCGCTGTTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCACCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTATTAATAATTGTGGTGTAACTGGAGTTGGATCTCTAGGACCAGGTGCTTCATCATCTCCCATTTGTTCACCACCCTTAGCTTCTGCTTCATTCAAATCTCCTTTTGATCTTCATCTTGATGAACGTTCCTCTGGGACCAAGAATGAAGACGAAGATCATGTGGGTGGGGATGGCAGATCAGGTGGAGGTGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTCCAAGACTCTGACAACGTTGAAAACAATGCTGCTGCTGGCCGTAGCCTCTCTATTTCAATGCCCGGTGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACTCGGGCCCAGGAAATGAGAATGTAAGCCTCGAGGCAGAGCAGCTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGTCTAATCAAGTGGCTTCGATGGGAGGTCCACTTGCTGAGGCACTCAGATCATCTACTTCAACCTCATCTCCCACTAGTGTTTTGCATCGTCACTTGCCTCGTGGATCTGAGACCAGCTTTATTAGCACCTGA 1149 0.4987 MDFHLKQWRNQHESEEQHSTKMPKLLPESHQQQQPSASALPLFVPEPNSSKVSTLSDSTLASATMTSTTTNRLFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYYHPLQHYQPSALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSAINNCGVTGVGSLGPGASSSPICSPPLASASFKSPFDLHLDERSSGTKNEDEDHVGGDGRSGGGGGHMLRHFFDDWPRSLQDSDNVENNAAAGRSLSISMPGASSDVSLKLSTGYGEDSGPGNENVSLEAEQLQLNWAGGWASSNQVASMGGPLAEALRSSTSTSSPTSVLHRHLPRGSETSFIST* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1617 382 Pfam WRC 148 190 IPR014977 -
Gso3g1617 382 MobiDBLite consensus disorder prediction 355 382 - -
Gso3g1617 382 ProSiteProfiles QLQ domain profile. 80 115 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso3g1617 382 PANTHER GROWTH-REGULATING FACTOR 3 11 381 - -
Gso3g1617 382 MobiDBLite consensus disorder prediction 1 42 - -
Gso3g1617 382 Pfam QLQ 81 113 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso3g1617 382 MobiDBLite consensus disorder prediction 1 23 - -
Gso3g1617 382 PANTHER - 11 381 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gso3g1617 382 SMART QLQ_2 79 115 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso3g1617 382 MobiDBLite consensus disorder prediction 24 39 - -
Gso3g1617 382 MobiDBLite consensus disorder prediction 234 254 - -
Gso3g1617 382 ProSiteProfiles WRC domain profile. 147 191 IPR014977 -
Gso3g1617 382 MobiDBLite consensus disorder prediction 234 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1617 Gso-Chr3 42136084 42139547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1617 1 369 GRF Transcription Factor Family AT3G52910 49.109 9.01e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso3g1617 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1617 - - gmx:100816436 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1617 3 42136084 42139547 Gso3g1617 3 42136084 42139547 ECH
Gso19g1597 19 44939378 44942932 Gso3g1617 3 42136084 42139547 GST
Gso3g1617 3 42136084 42139547 Gso10g0584 10 6769498 6772799 PCT
Gso10g0584 10 6769498 6772799 Gso3g1617 3 42136084 42139547 PCT