Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1612 ATGGAAATGGAGGACCATCATCGTCACCATCATCAGTATGGCATCACTGATCTGAGGCAACTCGTTAACGGCCCTCGGCCGACTCATTTCCCCACCATGCCGCCACCGCCCAAGGCGGAGCTGTTCCCCGGCGACTCCAACCTGCAGGCTGCGACACAACAACACTACGAGATGATGATGTTTGGTCGTCAAGTAGCCGACATAATGCCTCCTCGTTGTCTTCATGACTTCGCCTCCACCGATTCCGCCACCAACATCGCCGTTGCCACTCCCACCACCACCCCTAGCGCCTCCACTCCTCCGCTTAGTTGCTTAGAGGCCGAGACCGCAGGATGCATCGGTGGAGACGCCTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTCCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAGGGTCCCTTATGGGATGAAGTTTCTAGGAACATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAACCTGTACAAATATTACAAGAAGACAAAGGAAGGAAAAGCTGGAAGACAAGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAGCCTCGGTGCCAGAAACCAATTTTGGCAGTGGTAGCCTTCGTTTCCACACAAGCAGCCACAATAATAACCCTTCTCAAACAAATCAAGAAATGTTTCAGTCTCAGAAGCATTGTGACAGCCTAAGCCTCACCAACTCCACTGATTTGGACACTTCATCATCGGATGACAATGATCAAAATAGCACTGGCAGGGAACTCAACAAGGACAATGACTCCATGGAGAAGAGGAGAAAGAGGGTGAGTGGAAGAAGCTGGAAGGTGAAGATAAAGGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGATAAACTCACAAAGACACTGGAACAGAAGGAAAAAGAGAGAGTGTTAAGAGAAGAAGAGTGGAGGAGACAAGAATCTGTAAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAGGCTTTGCACAAATTAACACGAAATGAGATAATGAAGAGTACTCATTCTCACGAGGGTCTAATGGTAACTGGAATTCAAATCCACAGTGAAAACCAGAATGAAGATGGGAGTGAAATACTAAATAGCACTGCTGCCAGAGGTGCTGAAAGCTGGCCAGAATCTGAGATTGCAAGGCTTCGACAGTTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTTTTCAGAAGAGGTTATGTGGGAGGAAATAGCTACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTGGTATTCAAAGAGAAATGGGAAAGTATAAGCAGCAACTATGCAAGGAGTGCCAAGGATGGAAGCAAGAAGCGCAAGGAAGACTCAAGAAGTTGTTTTTACTTCGATAACAGTGACCAATCTTCTCTGTATAACCAAGGAGGTGCCTATTGTGATATCAATGATCAAAGGCACGAGACTGGGAGGCTGCAAACAAATGACGGTTCTTCACCTTCCAATTCAAATGTTGGAAATGCAGTTGCGGGTGATAACTGCTTTCCCTTCTTGATGACTGAGGGTGGAAATTTGTGGGAGAACTATAGCTTAAAGGTTAATAAAGCATGCCAAAACCAGTGA 1749 0.4626 MEMEDHHRHHHQYGITDLRQLVNGPRPTHFPTMPPPPKAELFPGDSNLQAATQQHYEMMMFGRQVADIMPPRCLHDFASTDSATNIAVATPTTTPSASTPPLSCLEAETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRNMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQASVPETNFGSGSLRFHTSSHNNNPSQTNQEMFQSQKHCDSLSLTNSTDLDTSSSDDNDQNSTGRELNKDNDSMEKRRKRVSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQESVRLEREHKFWAKERAWIEARDAALMEALHKLTRNEIMKSTHSHEGLMVTGIQIHSENQNEDGSEILNSTAARGAESWPESEIARLRQLRAEMETRYMQSGFSEEVMWEEIATKMACFGYERSALVFKEKWESISSNYARSAKDGSKKRKEDSRSCFYFDNSDQSSLYNQGGAYCDINDQRHETGRLQTNDGSSPSNSNVGNAVAGDNCFPFLMTEGGNLWENYSLKVNKACQNQ* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1612 582 MobiDBLite consensus disorder prediction 212 294 - -
Gso3g1612 582 PANTHER - 23 573 - -
Gso3g1612 582 MobiDBLite consensus disorder prediction 275 292 - -
Gso3g1612 582 MobiDBLite consensus disorder prediction 212 274 - -
Gso3g1612 582 CDD GT1 425 488 - -
Gso3g1612 582 Pfam Myb/SANT-like DNA-binding domain 424 510 IPR044822 -
Gso3g1612 582 Pfam Myb/SANT-like DNA-binding domain 121 207 IPR044822 -
Gso3g1612 582 Gene3D - 425 487 - -
Gso3g1612 582 Gene3D - 122 184 - -
Gso3g1612 582 SMART sant 421 484 IPR001005 -
Gso3g1612 582 SMART sant 118 181 IPR001005 -
Gso3g1612 582 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 23 573 - -
Gso3g1612 582 Coils Coil 315 342 - -
Gso3g1612 582 ProSiteProfiles Myb-like domain profile. 114 179 IPR001005 -
Gso3g1612 582 CDD GT1 121 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1612 Gso-Chr3 42049035 42052560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1612 10 577 Trihelix Transcription Factor Family AT5G03680 43.044 2.90e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso3g1612 Myb_DNA-bind_4 1.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1612 - - gmx:100815903 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1612 3 42049035 42052560 Gso3g1612 3 42049035 42052560 ECH
Gso19g1593 19 44852449 44855914 Gso3g1612 3 42049035 42052560 GST
Gso3g1612 3 42049035 42052560 Gso2g1721 2 40817606 40818626 PCT
Gso3g1612 3 42049035 42052560 Gso10g0579 10 6632071 6635690 PCT
Gso2g1721 2 40817606 40818626 Gso3g1612 3 42049035 42052560 PCT
Gso10g0579 10 6632071 6635690 Gso3g1612 3 42049035 42052560 PCT