LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1608	ATGAGCATGGAGAGCACGCGCAGATCGTTGGACAGATCCAGAGAACCAGGTCCCAAGAAGCCTCGATTGATCGACGAACTCAGCGCCCGACAGTTACCTCAACGCACTGCGGCAGTTACTACGCTGGCGTCTACGAGGTTTCGAGCAAATGACAGAGACTCCGAAATCAGCGATTTGGGTCGTGGCGGTGGCGGCGGCGGGTATCAGCCGCAGCCTCCGCCGCACCAAGAGCTTGTGACTCAATACAAGACCGCACTTGCTGAGCTCACTTTCAATTCGAAGCCGATAATTACCAACTTGACTATTATTGCAGGAGAGAATCTCTCTGCTGCCAAGGCAATTGCTGCTGCTGTTTGTGCTAACATTATAGAGGTTCCAAGTGATCAAAAACTGCCATCTCTTTACCTCTTAGACAGTATTGTTAAGAACATCAGACGGGATTATATAAAGTATTTTGCTTCCAGACTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTTGTGTGCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTCCCTTCAGATGATTGAGAAGGAACTTGGCTTTGCACCTGCAGTCAATGGTTCGGCTTCAGTGTCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGAGCAAAGGAGTAGTTAGTGATATGACTGGAGCTGTTTTAAACTCAAATGAGGATTCGGAGAGGCCAGATAGAGCTGCTGCACGACCCTGGCTGGATCCGAGGATTAACATGCTTAATAATCAGCACACACACAGAGATGCATTTAATGATTCTGTTACTGAAAAGAGCATTGATGGATCATACGGAAGCAGTGAATATAGTTCTGTCATTTCAAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAAGTAAGCTCATTGATTTAGGACATGACAAAACATGGTTCAAAACAGATGGGGGTGATGCAGATACTACATCTGGGCAAAGAAATGGTTTTGGTCTCAAGCGTAGTTTTTCAAATCAAGAAGCACCAAAGTCCATGAATTTGGATGCACATCGTCAGCCAAGACAAAGCATAACTAACTTACGGAACAATGTGATGTCAGGTAACTGGAAAACTTCTGAAGAAGAGTTCACACGGGATGAGATGAACAATGGTTTGATTGATCATGGACCCAATGTATTAAGCAATTTGAGCACAGACACATGGATGACTGATGATGAAAATTTGGAAGGTGAAGATCACCTCCACCTCCAAATCACACGCCCAATTGGGACAAAGGTCGATAGAGAAATATCCACTGTTAAGAAACAACTACCTGGTTTGGGGGGCCATCCACCATCATCATGGCAATTGCAGAAGCACCACTCAATTGATAAGTTGAATCTAAAGCCAGATTACTCTGAAGGATTTGTGTCCACTCTTAGTGGCTTACCAACCAATGCAAGTTCTTTGGCTGTCAAGAAGGGGAACCAATCCTTTATGTCCAATGCAGTAGTAGGAATGACCAAATTTGTGGGACAACAATTTGATTCGGGTGAAACTGAATCCCCTTCTGGGCAGTCACCTTTGCGGCAACAGTCTCCATCACTGCCAGGAACAGTACACCACCCTCATTCAATGCAAAACTTGGCTAACCAAGAATTGCCACCGAGTCTCAAAACCTCTCAACTTTTGGGAGGTCAGATAATCAGTCAGCATATTAGAGATCACTCACCTACCCTTCGTCCCATTGTAAAGGTTGGTAACTTGCGAAGATCACAAGAAAAGGATATGCAGGGCCCATTATCTTCCATGACCTCTCTTCGACCAAAGCTTCAGCAAAAGCAGCTGAACCCATCTCAGACTGAAGTTACTGCTACAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAGAGGAACTTCAGAACAGTTGACCACAAATAATTTGTCAGCTGCACCTGTCAAAACTGGAATCATCCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCGTCCATCTCAGACTGGGGTTCAGCCTACTCAGTCTGGTAGGCCTACCACATTAATTTCTTCAGGGTCTGCTGTGGCATCACCATCTTCATTAGATCCTCTGCATAATGATTCATCTACACTGCCAAAAAAACCTAAAGGAAAGGCTGGACAACCACCACAAAGGCTTTCTACTCAACCACCTGCTTCCTCTAATGTTAGCAGTTCCTCAGCTCCGATCTTAAATGCGGCCAAAAATAATAAACCAAATCCAATTGCAAACCTTTTAAGCACATTGGTTGCAAAGGGTTTGATATCTGCCGAAACAGAATCACCAACTACGGTACCAAGCGTGGCACCAAAGGGATCCAAAGATCAAACTGAGATCATTACCACCAGTTGTTCTTTACCAGTTACATCAATTTCTGGTTCTGCAGCTGTCCCAGTATCGTCTTCCGAAGATGAGGTAGATGCTGCTACAAAAACCTGTCTTGCCTCACCTCAATCAACTAGCACGGAAATCAGAAATCTCATTGGCTTTGATTTTAGACCTAATGTAATTCGAGAATTCCACCCATCTGTAATTAGGGAATTATGGGATGATATCCCTCATCATTGCAAAGTTTGCGGTATTAAGCTTAAACAAGAAGAACTCTTTAATAGACACTTGGAGTGGCATGCCACAAGAGAACATGGTCCAATTAAGGCATCAAGAAGTTGGTATGCGAAGTCAAGTGATTGGATTGCTGGCAAGGCAGAATATTCATCTGAGTCCGAGTTTAATGATTCTGTTGATGTACACGACGAAAAAACAGGCAGCAGTCAATTGGATACGATGGTTCTAGCAGATGAAAACCAGTGTCTGTGTGTATTGTGCGGCGAGCTATTTGAAGATGTGTACTGTCATGAAAGGAATGAGTGGATGTTCAAAGGGACCATTTACATGAACTATTCAGATGTCAATAGTGAGATGGAAAGTGGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATCATCACCAATTTGGATAATGATTAA	3105	0.439	MSMESTRRSLDRSREPGPKKPRLIDELSARQLPQRTAAVTTLASTRFRANDRDSEISDLGRGGGGGGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAAAVCANIIEVPSDQKLPSLYLLDSIVKNIRRDYIKYFASRLPEVFCKAYRQVDPCVHSSMKHLFGTWKGVFPPQSLQMIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVSDMTGAVLNSNEDSERPDRAAARPWLDPRINMLNNQHTHRDAFNDSVTEKSIDGSYGSSEYSSVISSNLVSGAGRTGSKLIDLGHDKTWFKTDGGDADTTSGQRNGFGLKRSFSNQEAPKSMNLDAHRQPRQSITNLRNNVMSGNWKTSEEEFTRDEMNNGLIDHGPNVLSNLSTDTWMTDDENLEGEDHLHLQITRPIGTKVDREISTVKKQLPGLGGHPPSSWQLQKHHSIDKLNLKPDYSEGFVSTLSGLPTNASSLAVKKGNQSFMSNAVVGMTKFVGQQFDSGETESPSGQSPLRQQSPSLPGTVHHPHSMQNLANQELPPSLKTSQLLGGQIISQHIRDHSPTLRPIVKVGNLRRSQEKDMQGPLSSMTSLRPKLQQKQLNPSQTEVTATTKLPQSKVSLTRGTSEQLTTNNLSAAPVKTGIIPKKSITSNLDPRKRPSQTGVQPTQSGRPTTLISSGSAVASPSSLDPLHNDSSTLPKKPKGKAGQPPQRLSTQPPASSNVSSSSAPILNAAKNNKPNPIANLLSTLVAKGLISAETESPTTVPSVAPKGSKDQTEIITTSCSLPVTSISGSAAVPVSSSEDEVDAATKTCLASPQSTSTEIRNLIGFDFRPNVIREFHPSVIRELWDDIPHHCKVCGIKLKQEELFNRHLEWHATREHGPIKASRSWYAKSSDWIAGKAEYSSESEFNDSVDVHDEKTGSSQLDTMVLADENQCLCVLCGELFEDVYCHERNEWMFKGTIYMNYSDVNSEMESGNVGPIIHAKCLSENSIITNLDND*	1035

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1608	1034	ProSitePatterns	Zinc finger C2H2 type domain signature.	890	910	IPR013087	-
	Gso3g1608	1034	SUPERFAMILY	ENTH/VHS domain	74	202	IPR008942	-
	Gso3g1608	1034	Gene3D	-	71	199	IPR008942	-
	Gso3g1608	1034	MobiDBLite	consensus disorder prediction	743	773	-	-
	Gso3g1608	1034	CDD	CID_Pcf11	79	191	-	-
	Gso3g1608	1034	PANTHER	PRE-MRNA CLEAVAGE COMPLEX II	3	1029	IPR045154	GO:0000993\|GO:0003729\|GO:0006369\|GO:0006378\|GO:0006379
	Gso3g1608	1034	MobiDBLite	consensus disorder prediction	50	75	-	-
	Gso3g1608	1034	MobiDBLite	consensus disorder prediction	534	563	-	-
	Gso3g1608	1034	ProSiteProfiles	CID domain profile.	74	202	IPR006569	-
	Gso3g1608	1034	Pfam	CID domain	83	192	IPR006569	-
	Gso3g1608	1034	MobiDBLite	consensus disorder prediction	688	728	-	-
	Gso3g1608	1034	PANTHER	RNA POLYMERASE II-BINDING DOMAIN PROTEIN	3	1029	-	-
	Gso3g1608	1034	MobiDBLite	consensus disorder prediction	1	26	-	-
	Gso3g1608	1034	MobiDBLite	consensus disorder prediction	594	773	-	-
	Gso3g1608	1034	MobiDBLite	consensus disorder prediction	1	32	-	-
	Gso3g1608	1034	MobiDBLite	consensus disorder prediction	614	672	-	-
	Gso3g1608	1034	MobiDBLite	consensus disorder prediction	214	268	-	-
	Gso3g1608	1034	MobiDBLite	consensus disorder prediction	235	260	-	-
	Gso3g1608	1034	SMART	558neu5	77	199	IPR006569	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1608	Gso-Chr3	42008096	42014243	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g1608	31	236	C2H2 Transcription Factor Family	AT4G04885	52.885	3.07e-56	207

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Gso3g1608		CID	6.1e-14	CL0020

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso3g1608	3	42008096	42014243	Gso3g1608	3	42008096	42014243	ECH
	Gso19g1590	19	44813742	44820543	Gso3g1608	3	42008096	42014243	GST
	Gso3g1608	3	42008096	42014243	Gso10g0574	10	6557978	6565355	PCT
	Gso10g0574	10	6557978	6565355	Gso3g1608	3	42008096	42014243	PCT