LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1607	ATGAACTCGTCTCCGTCTTCTTCCCAGTTACCTTCATCAAGCGCTGATTTTGACAAGTTAAATAGTTTGCCGCGCTTCCGCCCACTTGAATGCTTGCAAGGGAACCCGGTTCCGGCGTTCCTGTCCAAGACTTTCGAACTCGTCGACGATCCCTCGCTGGATCCGATCATATCCTGGGGCTCCACCGGTGTTAGCTTCGTGGTGTGGGATCCTACCCTGTTTGCAAGACACGTCTTGCCGAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAATACCTATGGATTCCGCAAGATTGACACTGAAAAATGGGAGTTTTTCAATGAAGCTTTCCAGCGAGGAAAGAGACATCTTCTGAAGAACATCCGGAGGCGCGGGCCACCTCAGTCCCATCAGGTTGGTGGCAATATTGTGCCTTATTCCGATGCAGATAAGGCCGGGCTTGAATTTGAGCTAGAAAGTCTAAGGAAAGAAAGGAGTGTGCTAATGCAAGAGGTGGTTGAGTTGCAACAACAGCAGAGAACGACACTTCAACGTGCGAGACAGGTGAATCAGAGGCTTCAATCTGCAGAACTGATACAGAAACAAATGGTTTCTTTCTTGGCAAGGTTATTTGAAAAGCCAGCATTTTTAACCAGTCTCCAGCATGCGAAGGAACAAAGAGATTTAGGGTGTCCTAAAGTTAGAAGGAGATTTATCAAGCAGCACCAAGGCCAAACAGAAATATCAGATTTTTTAAATGAAGGGCAGATTGTAAGATACCAACCTGATTGGAGAAATGTAACCACCTCTTCTGAAATACAAGAAATGTATCCAGTTTCACTTGAAGAGTCTCCAAATTACCTTTCTCAGGCTTTGGCAAAAGAATTTAGTGAAGGCACAGAGAATCTGATATCAGATGAAGTCATGTCAATTGCTGACACCATGGGGTTTAAGTCATCAAGCTTTGGACTTGATGGTAACCTTTTCAAAGGGAAAAATGTCATGAGCTCAAACGAAGGTCTTCTTGCAGAGGAGTTTGTGTCTTTCCCAGAGGATTTGACCAAGGAGACAGGATTTCCAGAGTTTTCACCTCTTGGAACTGAAGGCATCATCAAGCGAGAAGATAAACGGAACACCAACTTTGATGTTAGTGGTGCTGATTCAAGCTCTGGGAATGAACAGTGGGGAAATCCTATCAATTATGAAGTGCCAGAATTTGTAGTCACAAGTGGTATGACAGACATGTGGGATATTAACTATTTAACTCACAGCAAGTGA	1272	0.4403	MNSSPSSSQLPSSSADFDKLNSLPRFRPLECLQGNPVPAFLSKTFELVDDPSLDPIISWGSTGVSFVVWDPTLFARHVLPRNFKHNNFSSFVRQLNTYGFRKIDTEKWEFFNEAFQRGKRHLLKNIRRRGPPQSHQVGGNIVPYSDADKAGLEFELESLRKERSVLMQEVVELQQQQRTTLQRARQVNQRLQSAELIQKQMVSFLARLFEKPAFLTSLQHAKEQRDLGCPKVRRRFIKQHQGQTEISDFLNEGQIVRYQPDWRNVTTSSEIQEMYPVSLEESPNYLSQALAKEFSEGTENLISDEVMSIADTMGFKSSSFGLDGNLFKGKNVMSSNEGLLAEEFVSFPEDLTKETGFPEFSPLGTEGIIKREDKRNTNFDVSGADSSSGNEQWGNPINYEVPEFVVTSGMTDMWDINYLTHSK*	424

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1607	423	MobiDBLite	consensus disorder prediction	380	395	-	-
	Gso3g1607	423	Coils	Coil	149	176	-	-
	Gso3g1607	423	Pfam	HSF-type DNA-binding	40	129	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso3g1607	423	Gene3D	-	33	130	IPR036388	-
	Gso3g1607	423	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-3	25	420	-	-
	Gso3g1607	423	SMART	hsfneu3	36	129	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso3g1607	423	SUPERFAMILY	"Winged helix" DNA-binding domain	35	129	IPR036390	-
	Gso3g1607	423	ProSitePatterns	HSF-type DNA-binding domain signature.	79	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso3g1607	423	MobiDBLite	consensus disorder prediction	372	395	-	-
	Gso3g1607	423	PRINTS	Heat shock factor (HSF) domain signature	40	63	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso3g1607	423	PRINTS	Heat shock factor (HSF) domain signature	78	90	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso3g1607	423	PRINTS	Heat shock factor (HSF) domain signature	91	103	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso3g1607	423	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	25	420	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1607	Gso-Chr3	42004851	42007345	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g1607	28	404	HSF	AT5G03720	46.475	2.98e-93	285

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Gso3g1607		HSF_DNA-bind	4.8e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g1607	K09419		-	gmx:100788429	814.683