Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1606 ATGGAAATGCCTGCCAGAAGATCCATCAACTACTCCCTCCTCAGCCAAACTCCCGACGACAAATTAACGCCGCCGTTGTTCGGTTCCTCCTCCGGCGACGCTAAAATCAACAACAGCAAGTTCGAGAGAGTCTCCGATTGGGACTCCGGCGTCGATCACCGCCAGGGGAATCGGATCGGGAATTTGCACTCCTCGTTTGGGATGCAGCGGCAGTCCAGCGAGAGCAGTTTCGGCGAGAGCTCGCTCTCCGGCGAGTTTTACGCGCCTATTCTGTCGACCGTCGCGGCGAATGAGATCGACGGATTCAGAGGCAGGTTTCCGGGAAATTCGGCAATGAGGAGCGGAGGTTCCTCTGGCAAGAGCTGGGCGCAGCAGACGGAGGAGAGTTATCAGTTACAGCTGGCATTGGCTCTTCGGCTTTCATCGGAGGCCACGTGTGCTGATGATCCCAATTTTCTGGATCCCGTGCCCGATGAATCCGCGTTGAGGCCTTCGTCTTCGTCGTTTTCCGCAGAGGCAGTGTCGCATAGGTTTTGGGTGAATGGATGCCTATTATACTTCGACAAAATTCCTGATGGCTTTTATCTAATTCATGGGATGGATCCATATGTATGGACTGTGTGCACCAATCTGCAGGAAAATGACCGAATTCCTCCACTTGAGACACTAAAATCTATAAATCCTTCTTCTGACTCTTCACTTGAAGTAGTTTTTGTGGATAGACGTAGCGATCCTAGCTTAAGAGAACTGCAAAACAGAGTACAAGACATTTCTTGTTGCTGCATAGAAACAACTGATGTTGTAGACCAGCTTGCGAAGCTGGTTTGCAATTGTATGGGGGGTTCAGCTTCTGTATGGGAAGATGATCTTTTTCCTATATGGAGGGAGCGCATTAATGATCTAAGAGATTGCTTAGGATCTGTTGTTGTACCAATTGGCAGTCTATCTACTGGACTTTGCAGGCATCGTGCTGTATTATTCAAAGTACTAGCTGACACCATTGATTTGCCTTGTCGAATTGCTAAGGGCTGTAAATATTGTTCAAGAGATGATGCCTCCTCATGTCTTGTTCGATTTGGACTTGACAGGGAATACATGGTTGATCTTATTGGGAAGCCGGGTTGCTTATGCGAGCCTGATTCCTTGATCAATGGTCCATCCTCCATTTCATTTTCTTCACCCTTGCGCTTTCCTAGACATAAACCTGCTGAGCCTACCATTGATTTCAGGTCACTGGCCAAACAATATTTCTCAGATTGTATGTCTGCTGAGCTTGTCTTTGATAGTAGTTCTGCAGAACAGTATGAAAGGCAGTACATGGGCAGGAACCCTGGGCCAATTCCAAATGATAACAACAAAAGTTCTCTCGTTCCTCTGCATTCACAACCTTATTGTTCAAGTGCACATGATCGAGGCTCTGAAACATTTAAATCAGGTAACCCTGCTCAGAATGCTGTAGAGCCGACAATGACAAGCCGGGATTCATTGCCTTTAAAGCATAACCGTCCTGGTCATAGAGATACAAAGACCCGACTACTGATTCCTAGCAAACCAACTAGAGAGTTTTCCCTTGATATGGAGGATTTGGACATACCGTGGACTGATCTTGATTTAAAAGGGAGAATAGGATCAGGTTCTTTTGGAACTGTACATCATGCAGAGTGGAATGGCTCGGAGGTTGCTGTTAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAAGGGGTAGCTTGTATAGGCTGTTGCATAAACCTGGTGCCACAGAGATGTTGGATGAGAGACGTAGGCTTAGTATGGCTTATGATGTGGCTAAGGGGATGAATTATCTTCATAAACGCAATCCTCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGGTTGGTGATTTTGGGCTTTCCCGACTAAAGGCAAATACATTTCTCTCATCCAAGTCTGCTGCCGGGACTCCTGAGTGGATGGCTCCAGAAGTTCTTCGTGATGAGCCATCCAATGAGAAGTCAGATGTTTACAGCTTTGGTGTCATCTTGTGGGAGCTCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCGCCACAGGTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAACGAACCCTGGAAACGCCCTTCTTTTTCAAGTATTATGGATTCTTTGAAAGTATTGCTCAAATCCCCTATGCTTCAACCTGGTCGTCCAAGCATGTCATTACTTACCTGA 2433 0.4587 MEMPARRSINYSLLSQTPDDKLTPPLFGSSSGDAKINNSKFERVSDWDSGVDHRQGNRIGNLHSSFGMQRQSSESSFGESSLSGEFYAPILSTVAANEIDGFRGRFPGNSAMRSGGSSGKSWAQQTEESYQLQLALALRLSSEATCADDPNFLDPVPDESALRPSSSSFSAEAVSHRFWVNGCLLYFDKIPDGFYLIHGMDPYVWTVCTNLQENDRIPPLETLKSINPSSDSSLEVVFVDRRSDPSLRELQNRVQDISCCCIETTDVVDQLAKLVCNCMGGSASVWEDDLFPIWRERINDLRDCLGSVVVPIGSLSTGLCRHRAVLFKVLADTIDLPCRIAKGCKYCSRDDASSCLVRFGLDREYMVDLIGKPGCLCEPDSLINGPSSISFSSPLRFPRHKPAEPTIDFRSLAKQYFSDCMSAELVFDSSSAEQYERQYMGRNPGPIPNDNNKSSLVPLHSQPYCSSAHDRGSETFKSGNPAQNAVEPTMTSRDSLPLKHNRPGHRDTKTRLLIPSKPTREFSLDMEDLDIPWTDLDLKGRIGSGSFGTVHHAEWNGSEVAVKILMEQDFKGERFKEFLREVAIMKGLRHPNIVLLMGAVTKPPNLSIVTEYLSRGSLYRLLHKPGATEMLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVGDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWSNLNPPQVVAAVGFKGKRLEIPRDLNPQLASIIEACWANEPWKRPSFSSIMDSLKVLLKSPMLQPGRPSMSLLT* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1606 810 Gene3D Transferase(Phosphotransferase) domain 1 615 800 - -
Gso3g1606 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Gso3g1606 810 MobiDBLite consensus disorder prediction 9 34 - -
Gso3g1606 810 PRINTS Tyrosine kinase catalytic domain signature 610 623 IPR001245 GO:0004672|GO:0006468
Gso3g1606 810 PRINTS Tyrosine kinase catalytic domain signature 651 669 IPR001245 GO:0004672|GO:0006468
Gso3g1606 810 PRINTS Tyrosine kinase catalytic domain signature 698 708 IPR001245 GO:0004672|GO:0006468
Gso3g1606 810 PRINTS Tyrosine kinase catalytic domain signature 717 739 IPR001245 GO:0004672|GO:0006468
Gso3g1606 810 PRINTS Tyrosine kinase catalytic domain signature 761 783 IPR001245 GO:0004672|GO:0006468
Gso3g1606 810 ProSiteProfiles Protein kinase domain profile. 536 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1606 810 CDD STKc_MAP3K-like 542 790 - -
Gso3g1606 810 Pfam Protein tyrosine and serine/threonine kinase 537 790 IPR001245 GO:0004672|GO:0006468
Gso3g1606 810 SUPERFAMILY Protein kinase-like (PK-like) 513 790 IPR011009 -
Gso3g1606 810 SMART serkin_6 536 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1606 810 Pfam Ethylene-responsive protein kinase Le-CTR1 171 377 - -
Gso3g1606 810 MobiDBLite consensus disorder prediction 467 510 - -
Gso3g1606 810 MobiDBLite consensus disorder prediction 467 496 - -
Gso3g1606 810 Gene3D Phosphorylase Kinase; domain 1 529 614 - -
Gso3g1606 810 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 110 798 - -
Gso3g1606 810 ProSitePatterns Protein kinases ATP-binding region signature. 542 563 IPR017441 GO:0005524
Gso3g1606 810 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 110 798 - -
Gso3g1606 810 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1606 Gso-Chr3 41990541 42001477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1606 1 803 MAP Kinase Kinase Kinase AT5G03730 64.630 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gso3g1606 PK_Tyr_Ser-Thr 1.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1606 K14510 - gmx:100787894 1628.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1606 3 41990541 42001477 Gso3g1606 3 41990541 42001477 ECH
Gso19g1588 19 44780016 44796017 Gso3g1606 3 41990541 42001477 GST
Gso3g1606 3 41990541 42001477 Gso10g0572 10 6525313 6535091 PCT
Gso10g0572 10 6525313 6535091 Gso3g1606 3 41990541 42001477 PCT