Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1603 ATGGAGTTTTGGGGTGTTGAGGTGAAAAGTGGAGAATCTCTCAAGGTTGATCCGGGAGATGACAAGATTATCCACCTTTCAAATGCATGCCTGGGGGATGTCACTAAGGATAAAGAAGGTCTACCAGTAGCCCTGTATGTCAAGTTTGGTAACCAAAAGCTTGTACTTGGAACGCTTTCTTCTGAAGCTTTTCCTCAGATATCTTATGATTTGGTATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAACATGGAAGTGTCTTCTTTACCGGATTTAAAGCTCAATCTCAGTCAGAGTCTGATAATGATGAAGATTCTGATGATTTTGATGAAGATATTCCAGTTAGTGCTGCCAATGGTAAACCTGAGATTGAGGTGAAGAATGGCATCAAACCTGATGCAAATGAAGCTAAACAGAAGAAGATAGCAAATGGTGAAGATGAAGATTCATCCGAATCTGAATCTGATGATGATTCAAGTGAAGATCAGCTCACAGCGAATGGTGACATAGAAAGTAGTGAAGGTGATGATGATAGCGATGATGAGGAGGAGGGGGACGATGAATCTGATGAGGAGACACCCAAGAAGATTGAAGCAAGCAATAAGAGGGGTATTGACTCTTCTAAGAAAACGCCTGTTCCTGTGAAGAAGACAAAATTTGTTACTCCTCAGAAGACTGATAGCAAGAATGTTGTCCATGTTGCAACTCCTCACCCTTCTAAGCAGACTGGTAAAGCAACTGCTAATAACAAGCAGCAGACTCCGAAGTCAGGTGGAGATTACAGCTGCAAGCCTTGCAACAGGTCATTTAAGACAGAAGATGCCTTAAGTTCTCATAACAAGGCCAAGCACAGCACTAAGTGA 867 0.4187 MEFWGVEVKSGESLKVDPGDDKIIHLSNACLGDVTKDKEGLPVALYVKFGNQKLVLGTLSSEAFPQISYDLVFEKEFELSHNWKHGSVFFTGFKAQSQSESDNDEDSDDFDEDIPVSAANGKPEIEVKNGIKPDANEAKQKKIANGEDEDSSESESDDDSSEDQLTANGDIESSEGDDDSDDEEEGDDESDEETPKKIEASNKRGIDSSKKTPVPVKKTKFVTPQKTDSKNVVHVATPHPSKQTGKATANNKQQTPKSGGDYSCKPCNRSFKTEDALSSHNKAKHSTK* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1603 288 MobiDBLite consensus disorder prediction 193 214 - -
Gso3g1603 288 MobiDBLite consensus disorder prediction 150 165 - -
Gso3g1603 288 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 284 - -
Gso3g1603 288 MobiDBLite consensus disorder prediction 96 288 - -
Gso3g1603 288 MobiDBLite consensus disorder prediction 172 192 - -
Gso3g1603 288 MobiDBLite consensus disorder prediction 127 149 - -
Gso3g1603 288 Gene3D Nucleoplasmin core domain 1 100 - -
Gso3g1603 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 288 IPR013087 -
Gso3g1603 288 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 284 - -
Gso3g1603 288 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Gso3g1603 288 MobiDBLite consensus disorder prediction 225 261 - -
Gso3g1603 288 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1603 Gso-Chr3 41943117 41948055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1603 1 286 C2H2 Transcription Factor Family AT5G03740 40.461 2.27e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1603 NPL 5.3e-10 CL0055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1603 3 41943117 41948055 Gso3g1603 3 41943117 41948055 ECH
Gso19g1586 19 44754524 44758988 Gso3g1603 3 41943117 41948055 GST