Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1591 ATGGAATTGAAAGAAAGAGATCTAGACAGGGAACTGGAGACAGATATGGATTGGCATCACGGCACAAAGCCACTTGTTCCTCGGCCAGAGACCTTAAGCTTCTTCTACAACTATAACTACAACAGTCCATATCCAGGAGTGGAAGTGAAACAAGCAGCATTGATGGAGACAGGAGAAGGGTCAGTTCCAGCATTAATGGACAGCAGAAACAAAGAGAAGAAGAAGCGATTAACAAATAACCAGATAGAGTTATTGGAGAGGAGTTTTCAGGAGGAGATAAAGTTGGACCCTGAAAGGAAGATGAAGCTTTCCAGGGAGCTAGGCCTTCAGCCTCGCCAAATCGCCGTTTGGTTCCAAAATAGACGAACAAGGTGGAAGACCAAGCAGCTTGAGCACTTGTACGATGTGCTTAAACACCAATATGATGTCGTCTCCAACGAAAAGCAAAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAATGCTAAGTAAAGAGCAAGGTTTTGGGAAGCAAACATTTGGCTGTTATACAGAAATATCAGGGGAAGAAACAGTAGAAAGCACGTCAGAGGGTCTAACTCTAAGGGGAAAGAGTAACATTGAGCACGTTGCAGATCAAGGCTACTGTTCTTTCACTGTGGAGGATTATAACACCACTGTTTCACTGCCTCCTCACTGTCACTGGCCTGCTGTGCCTTATTAG 702 0.443 MELKERDLDRELETDMDWHHGTKPLVPRPETLSFFYNYNYNSPYPGVEVKQAALMETGEGSVPALMDSRNKEKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVVSNEKQKLQEEVMKLKAMLSKEQGFGKQTFGCYTEISGEETVESTSEGLTLRGKSNIEHVADQGYCSFTVEDYNTTVSLPPHCHWPAVPY* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1591 233 CDD homeodomain 71 129 IPR001356 GO:0003677
Gso3g1591 233 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Gso3g1591 233 Gene3D - 66 135 - -
Gso3g1591 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 16 230 IPR045224 GO:0003700
Gso3g1591 233 SUPERFAMILY Homeodomain-like 59 130 IPR009057 -
Gso3g1591 233 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Gso3g1591 233 Coils Coil 68 88 - -
Gso3g1591 233 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677
Gso3g1591 233 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677
Gso3g1591 233 Coils Coil 134 161 - -
Gso3g1591 233 SMART HOX_1 70 132 IPR001356 GO:0003677
Gso3g1591 233 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 16 230 - -
Gso3g1591 233 Pfam Homeobox associated leucine zipper 128 162 IPR003106 GO:0006355|GO:0043565
Gso3g1591 233 Pfam Homeodomain 71 126 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1591 Gso-Chr3 41840013 41842112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1591 27 158 Homeobox Transcription Factor Family AT5G03790 55.556 5.18e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso3g1591 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1591 - - gmx:100806798 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1591 3 41840013 41842112 Gso3g1591 3 41840013 41842112 ECH
Gso19g1573 19 44650189 44652184 Gso3g1591 3 41840013 41842112 GST
Gso10g1289 10 38915509 38918637 Gso3g1591 3 41840013 41842112 PCT