Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1590 ATGGTTCTCAAAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCCGGAAAGGGCATCAGATTTGTTCGTGGTGATTCTCAGGTTTTCCTGTTTGCCAACTCAAAATGTAAGCGGTATTTCCACAACCGCCTGAAGCCCTCAAAGCTCACCTGGACTGCTATGTACAGAAAGCAACACAAAAAGGACATTGCTCAAGAAGCTGTGAAGAAGAGGAGACGCGCTGCCAAAAAGCCTTACTCTAGGTCCATTGTTGGTGCCACTCTGGAAGTTATCCAGAAAAAGAGAGCTGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCTGCTCTTCGTGAAATTAAGGAGAGGATCAAGAAAACAAAGGATGAGAAGAAGGCTAAGAAAGCAGAAGTTACAGCCAAGTCGCAAAAAGCAGGAGGGAAAGGCATTTCTAAGGGTGCTATGCCCAAAGGTCCCAAACTCGGTGGTGGAGGCGGGAAACGCTGA 492 0.4756 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTAKSQKAGGKGISKGAMPKGPKLGGGGGKR* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1590 163 MobiDBLite consensus disorder prediction 117 163 - -
Gso3g1590 163 MobiDBLite consensus disorder prediction 117 136 - -
Gso3g1590 163 Coils Coil 112 136 - -
Gso3g1590 163 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Gso3g1590 163 Gene3D - 69 139 - -
Gso3g1590 163 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Gso3g1590 163 PANTHER 60S RIBOSOMAL PROTEIN L24 1 163 - -
Gso3g1590 163 PANTHER 60S RIBOSOMAL PROTEIN L24 1 163 IPR000988 -
Gso3g1590 163 SMART 4TRASH 8 46 IPR011017 -
Gso3g1590 163 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Gso3g1590 163 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Gso3g1590 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1590 Gso-Chr3 41833413 41835599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1590 1 156 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.076 1.18e-83 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1590 K02896 - gmx:100499979 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1590 3 41833413 41835599 Gso3g1590 3 41833413 41835599 ECH
Gso19g1572 19 44646809 44648827 Gso3g1590 3 41833413 41835599 GST
Gso3g1590 3 41833413 41835599 Gso10g0576 10 6595686 6597729 PCT
Gso10g0576 10 6595686 6597729 Gso3g1590 3 41833413 41835599 PCT