Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1584 ATGAGACACAGCTTCCATTTTTGGTATGCCTTTCTTCTTATCCTTGTCCTTGGCCGCCACATTTCTTCACTGAAGACTTGTCCAAACTGTGGCACTATCCAAGTTCCATACCCTTTGAGCACAGATTCAACTTGTGGTGATCAAAACTACAAGCTTCGTTGTGATCCCCACTCTCAAAGGCTTTTGTTCGACACCCTCAACGGAAGTTCCTATCTTGTTCTCAGAATCATGTCTTCAAACCAACGCATGGTGGTTCAGCCATCACCTTGGTTACCAGGTTCGTGTGTCACACAAGACATGCCAAGAAGCAATGGTATATGGTTAAATCAATCACTCCCTTTCAACATAACTTCATCCAACACAGTGTTCCTCTTTAACTGTTCCCCTCGCCTCTTGGTTTCTCCACTTAACTGTACTTCTTCTAGTATTTGCCATCGTTATTTGGAGAATTCAGGCCATGTTGACACAAAACTATCATTAGAGTGTGCAAGTGGTCTTCACCCTTGTTGCACTTTTCTAGCTGGAGGGATACCTTCAGCTTACAGGATCCGGCTTCATGATTCTGGTTGCAAAGCATTCAGAAGCATAATTCACTTGAACCAAGACAAGCCTCCGAATCAGTGGGAGGAAGGTCTTGAAATTCAATGGTCTCCTCCACCTGAACCAGTGTGCAAGAATCAAAGGGATTGCTCTGAAGACTCTAAGTGTTCCCCTACTAATAGAAATGGCCTATTTCGATGTCTTTGTAATGGGGGACACGTTTGGAACCCTTTTGAAGCAACCTGTGTGAGGTATGAGAGAAAATCCAAATGGAAAACCAGCTTGGTTGTCTCAATAGGGGTTGTTGTTACTTTTTTCTCCCTTGCTGTGGTTCTTACCATCATCAAAAAGTCCTGCAAACTCTCTAACTATAAAGAGAATCAGGCCAAGGACGAAAGAGAAGAGAAGCTGAAATCAAGTGCTATGGAGAAGCCTTGTAGGATGTTTCAACTGAAAGAGGTGAAGAAAGCAACAAACGGCTTTTCACACGAGAGGTTCTTGGGGAGTGGTGGATTTGGGGAAGTTTTCAAAGGTGAATTACAAGATGGAACATTGGTGGCTGTGAAAAAAGCTAGAGTGGGAAACCTGAAAAGCACCCAGCAAGTGCTTAATGAGGCCGCAATACTTTCTCAAGTGAATCACAAGAACCTAGTCAGGCTCTTGGGGTGTTGTGTGGAATCTGAGCTTCCACTTATGATCTATGAGTATATCTCAAATGGGACCCTCTATGACCATCTTCATGGTAGGTATTGTTCCAACTTTCTAGATTGGAAAACAAGGCTCAAAGTTGCTTTTCAAACTGCAGAAGCATTGGCTTACTTGCATTCTGCTGCACACACTCCAATCTACCATAGAGATGTTAAGTCAACAAACATACTATTGGATGATGAATTCAATGCAAAGGTCTCAGATTTTGGACTCTCAAGATTGGCTAGCCCTGGATTGAGTCACGTGTCAACATGTGCTCAGGGAACTTTAGGGTACTTGGATCCTGAATACTACCGCAACTACCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTAGAACTTTTGACATCACAGAAAGCGATTGACTTCAATCGTGATCAAGATGATGTCAACCTAGCAATTCATGTGAACCAACATGCCAGCAATGGTACAATCATGGAAGTGATGGATCAAAGGCTTCTTATTTCCCTGGAGACTTTGGGGGATAAAATGTTCACAAGCATAAAACTCTTTTTGGAGCTTGCACTTGAATGTCTAAGGGAGAAGAAAGGTGAAAGGCCTAATATGAGGGATATTGTTCAACGCCTACTATGCATAATTAGGATTGTAGAACAAGAGTGA 1884 0.4246 MRHSFHFWYAFLLILVLGRHISSLKTCPNCGTIQVPYPLSTDSTCGDQNYKLRCDPHSQRLLFDTLNGSSYLVLRIMSSNQRMVVQPSPWLPGSCVTQDMPRSNGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTSSSICHRYLENSGHVDTKLSLECASGLHPCCTFLAGGIPSAYRIRLHDSGCKAFRSIIHLNQDKPPNQWEEGLEIQWSPPPEPVCKNQRDCSEDSKCSPTNRNGLFRCLCNGGHVWNPFEATCVRYERKSKWKTSLVVSIGVVVTFFSLAVVLTIIKKSCKLSNYKENQAKDEREEKLKSSAMEKPCRMFQLKEVKKATNGFSHERFLGSGGFGEVFKGELQDGTLVAVKKARVGNLKSTQQVLNEAAILSQVNHKNLVRLLGCCVESELPLMIYEYISNGTLYDHLHGRYCSNFLDWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNAKVSDFGLSRLASPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFNRDQDDVNLAIHVNQHASNGTIMEVMDQRLLISLETLGDKMFTSIKLFLELALECLREKKGERPNMRDIVQRLLCIIRIVEQE* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1584 627 ProSiteProfiles Protein kinase domain profile. 341 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1584 627 CDD STKc_IRAK 347 617 - -
Gso3g1584 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Gso3g1584 627 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524
Gso3g1584 627 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 19 627 - -
Gso3g1584 627 SMART serkin_6 341 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1584 627 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 19 627 IPR045274 GO:0007166
Gso3g1584 627 Pfam Wall-associated receptor kinase galacturonan-binding 27 85 IPR025287 GO:0030247
Gso3g1584 627 Gene3D Phosphorylase Kinase; domain 1 301 416 - -
Gso3g1584 627 Gene3D Transferase(Phosphotransferase) domain 1 417 626 - -
Gso3g1584 627 SUPERFAMILY Protein kinase-like (PK-like) 318 617 IPR011009 -
Gso3g1584 627 Pfam Protein tyrosine and serine/threonine kinase 344 617 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1584 Gso-Chr3 41787862 41790376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1584 27 627 Receptor kinase-like Gene Family AT5G02070 46.965 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso3g1584 PK_Tyr_Ser-Thr 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1584 - - gmx:100783644 1280.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1584 3 41787862 41790376 Gso3g1584 3 41787862 41790376 ECH
Gso19g1565 19 44598733 44601140 Gso3g1584 3 41787862 41790376 GST