Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1582 ATGGCGGTTCCTCCGTCGGTCGCCGCCGCTCCGGCGTCGCTCTACGTCGGCGACCTCCACCCCAACGTCTCCGACAACCACCTCGTCGACGCATTCTCCGACTTCGAGAGCCTCGCGTCTGTTCGCGTCTGCAAAGACTCCTCCACCGGCAAATCCCTCTGTTACGGTTACGTCAACTTCGTTTCCCCTCAAGACGCAATTCGTGCAATCGAGCTGAAAAATAACTCCACGCTGAATGGGAAAGCGATGAGGGTGATGTGGTCGCGTCGCGATCCTGATGCGAGGAAAAATGCTATAGGGAACTTGTTTGTTAAGAACTTACCTGAATCGATAGATAATGCTGGACTACAAGATATGTTCAAAAAATATGGCAATATTCTGTCCAGCAAAGTCGTCATGTCTGAGGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAATCAGAAGAATCTTCAAATGTTGCCATCGAGAAGCTGAACGGCTCTACTGTTGGTGATAAGCAGTTATATGTTGGGAAGTTTGTCAAAAAAAGTGATCGCATTTTGCCTGGCCCTGATGCTAGATATACAAATTTGTACATGAAGAATTTGGACCTGGATGTTTCAGAAGCAACACTGCAGGAGAAATTTTCCTCTTTTGGGAAAATTGTTAGCTTGGTTATTGCAAAGGACAACATTGGAATGTCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATCAAAATTAGGTTCTAAGATTCTGTATGTAGCCAGAGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCACCACCAATTTGAGGAGAAGCGGAAGGAACAAATCTTGAAATACAAGGGATCGAACATTTATGTGAAGAACATTGATGACCATGTAAGTGATGAAGAACTGAGGGATCATTTTAGTGCATGTGGCATTATAACTTCTGCAAAAATTATGCGAGACGACAAAGGGATAAGTAAAGGGTTCGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACATTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGATAGGAAAGCACAATTGCAGCTCCAGTATGCACAGCAAGTGGCAGGACTATCTGGACCATCAACTGCCATTATCCCTGGTGGATATCCTCCTTACTACTATGCAGCTACTGGTGTTATTTCACATGTGCCTCCTCGAGCTGGGCTGATGTATCAACATCTGCCAATGAGGCCAGGATGGGGGGCTAATGGCTTTGCACTCCCTGCTAGATCATTCCAACAATCACCAGTTCCTGCAGTTTCTAACAATACCAGGCAGCATAGGCAAAACAGGGGAAGGTTGAATGGGAATCCAATAGCACAGGGAAATACTCACTCTGTTACTTATTTACCACAAGCCCAGCAGATTTCTCAGCCAGTGATCTCTTCAAGTACTCAGCAGAGAACCGGACAGGCTAAGTACTTACCTAGTGGACGCCAGCGTGACATGGAAAAAGGATCTGGATCCTCATCTAGTGGTTCAAACTCTGGCAGAGGGTCCCAGGGGTCAGAAATGCTGCATAGCATGCTTGCTGGTGCTGCTCCTGAGCAGCAGAAAGAGATTCTCGGGGAGCATCTTTACATGCTTGTTCATAAACTAAAGCCTACCCTAGCAGCCAAAATAACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAATCGCCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTTCCTTTCAGCTGAGGTTGCAGTTAACTGA 1899 0.4592 MAVPPSVAAAPASLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKNAIGNLFVKNLPESIDNAGLQDMFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKKAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYAQQVAGLSGPSTAIIPGGYPPYYYAATGVISHVPPRAGLMYQHLPMRPGWGANGFALPARSFQQSPVPAVSNNTRQHRQNRGRLNGNPIAQGNTHSVTYLPQAQQISQPVISSSTQQRTGQAKYLPSGRQRDMEKGSGSSSSGSNSGRGSQGSEMLHSMLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNFLSAEVAVN* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1582 632 SUPERFAMILY RNA-binding domain, RBD 184 274 IPR035979 GO:0003676
Gso3g1582 632 Pfam Poly-adenylate binding protein, unique domain 543 607 IPR002004 GO:0003723
Gso3g1582 632 Coils Coil 263 283 - -
Gso3g1582 632 MobiDBLite consensus disorder prediction 516 536 - -
Gso3g1582 632 CDD RRM2_I_PABPs 99 174 IPR045305 -
Gso3g1582 632 SUPERFAMILY PABC (PABP) domain 539 618 IPR036053 GO:0003723
Gso3g1582 632 SMART rrm2_1 295 367 IPR003954 GO:0003676
Gso3g1582 632 SMART rrm2_1 192 264 IPR003954 GO:0003676
Gso3g1582 632 SMART rrm2_1 101 173 IPR003954 GO:0003676
Gso3g1582 632 SMART rrm2_1 13 86 IPR003954 GO:0003676
Gso3g1582 632 CDD RRM4_I_PABPs 293 371 - -
Gso3g1582 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Gso3g1582 632 PANTHER POLYADENYLATE-BINDING PROTEIN 5 510 - -
Gso3g1582 632 PANTHER POLYADENYLATE-BINDING PROTEIN 532 617 - -
Gso3g1582 632 SMART poly_2 547 610 IPR002004 GO:0003723
Gso3g1582 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Gso3g1582 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Gso3g1582 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Gso3g1582 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Gso3g1582 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Gso3g1582 632 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 608 IPR006515 GO:0003723
Gso3g1582 632 Gene3D - 3 99 IPR012677 -
Gso3g1582 632 Gene3D - 181 274 IPR012677 -
Gso3g1582 632 Gene3D - 533 625 - -
Gso3g1582 632 Gene3D - 275 382 IPR012677 -
Gso3g1582 632 MobiDBLite consensus disorder prediction 490 536 - -
Gso3g1582 632 SMART rrm1_1 13 86 IPR000504 GO:0003723
Gso3g1582 632 SMART rrm1_1 101 173 IPR000504 GO:0003723
Gso3g1582 632 SMART rrm1_1 295 367 IPR000504 GO:0003723
Gso3g1582 632 SMART rrm1_1 192 264 IPR000504 GO:0003723
Gso3g1582 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Gso3g1582 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Gso3g1582 632 MobiDBLite consensus disorder prediction 449 477 - -
Gso3g1582 632 Gene3D - 100 180 IPR012677 -
Gso3g1582 632 PANTHER RNA BINDING PROTEIN 532 617 - -
Gso3g1582 632 PANTHER RNA BINDING PROTEIN 5 510 - -
Gso3g1582 632 MobiDBLite consensus disorder prediction 490 507 - -
Gso3g1582 632 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 535 612 IPR002004 GO:0003723
Gso3g1582 632 SUPERFAMILY RNA-binding domain, RBD 291 386 IPR035979 GO:0003676
Gso3g1582 632 CDD RRM1_I_PABPs 13 92 - -
Gso3g1582 632 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1582 Gso-Chr3 41765610 41770253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1582 12 630 Eukaryotic Initiation Factors Gene Family AT2G36660 54.153 0.0 629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1582 3 41765610 41770253 Gso3g1582 3 41765610 41770253 ECH
Gso19g1563 19 44577121 44582052 Gso3g1582 3 41765610 41770253 GST
Gso3g1582 3 41765610 41770253 Gso10g0550 10 6160181 6164746 PCT
Gso10g0550 10 6160181 6164746 Gso3g1582 3 41765610 41770253 PCT